Unknown,Transcriptomics,Genomics,Proteomics

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RNAseq in whole freshwater planarians, Schmidtea mediterranea, following RNAi of the transcription factors lhx1/5-1 and pitx.


ABSTRACT: Freshwater planarians can be used as a model to investigate neuronal function and maintenance in adults in vivo. We knocked down expression for 2 transcription factors, then sequenced resulting animals to examine transcriptional changes that may have occurred. There are 3 triplicated conditions: control(RNAi) using the unc22 gene from C. elegans, lhx1/5-1(RNAi), and pitx(RNAi). Worms were fed RNAi for each gene 5 times over 12 days then were collected 12 days later. Approximately 50 million single-end reads were performed on each sample.

ORGANISM(S): Schmidtea mediterranea

SUBMITTER: Bret Pearson 

PROVIDER: E-GEOD-47348 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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