Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hns mutant vs Shewanella piezotolerans WP3 wild-type strain 4C and 20C

ABSTRACT: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Shewanella piezotolerans WP3

SUBMITTER: Huahua Jian

PROVIDER: E-GEOD-57940 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

hns mutant vs Shewanella piezotolerans WP3 wild-type strain 20C

Project description:The hns gene was deleted from WP3 genome to construct the WP3M-NM-^Thns strain. The two strains were cultured at 20M-BM-0C and the transcriptional profiles were compared. Three biological replicates sample and 6 technical replicates for each experiment

2014-07-01 | E-GEOD-57905 | biostudies-arrayexpress

hns mutant vs Shewanella piezotolerans WP3 wild-type strain 4C

Project description:The hns gene was deleted from WP3 genome to construct the WP3M-NM-^Thns strain. The two strains were cultured at 4M-BM-0C and the transcriptional profiles were compared. Three biological replicates sample and 6 technical replicates for each experiment

2014-07-01 | E-GEOD-57877 | biostudies-arrayexpress

SW1 mutant vs Shewanella piezotolerans WP3 wild-type strain

Project description:The prophage and RF DNA of SW1 were removed from WP3 to construct the phage-free strain. The two strains were cultured at 20MPa and 4M-BM-0C and the transcriptional profiles were compared. Three biological replicates sample and 6 technical replicates for each experiment

2015-03-04 | E-GEOD-66462 | biostudies-arrayexpress

crpD1 mutant vs Shewanella piezotolerans WP3 wild-type strain

Project description:The cAMP binding domain of crp gene was deleted from WP3 genome to construct the WP3?crpD1 strain. The two strains were cultured at 20°C and the transcriptional profiles were compared. Three biological replicates sample and 6 technical replicates for each experiment

2015-04-10 | E-GEOD-67731 | biostudies-arrayexpress

crpD2 mutant vs Shewanella piezotolerans WP3 wild-type strain

Project description:The DNA binding domain of crp gene was deleted from WP3 genome to construct the WP3?crpD2 strain. The two strains were cultured at 20°C and the transcriptional profiles were compared. Three biological replicates sample and 6 technical replicates for each experiment

2015-04-10 | E-GEOD-67732 | biostudies-arrayexpress

SW1 mutant vs. Shewanella piezotolerans WP3 wild-type strain

Project description:The prophage and RF DNA of SW1 were removed from WP3 to construct the phage-free strain. The two strains were cultured at 4M-BM-0C and the transcriptional profiles were compared. WP3M-NM-^TSW1 is the test sample and WP3 wild-type is the reference sample. Three independent cultures were used for RNA extraction, and the RNA samples were combined into one sample for microarray. Each microarray slide has 3 spots for a single gene, and as dye-swaps were performed, 6 spots were used to determine the expression level of one gene.

2013-01-30 | E-GEOD-43882 | biostudies-arrayexpress

Shewanella piezotolerans WP3 wild-type strain under heat shock

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2016-06-15 | E-GEOD-82264 | biostudies-arrayexpress

Shewanella piezotolerans WP3 wild-type strain heat shock for 30 min

Project description:The WP3 strains was cultured at 20Â°C and heat shocked at 40Â°C for 30 min. The transcriptional profiles after and before heat shock were compared. Three biological replicates sample and 6 technical replicates for each experiment

2016-06-15 | E-GEOD-82261 | biostudies-arrayexpress

Shewanella piezotolerans WP3 wild-type strain heat shock for 90 min

Project description:The WP3 strains was cultured at 20Â°C and heat shocked at 40Â°C for 90 min. The transcriptional profiles after and before heat shock were compared. Three biological replicates sample and 6 technical replicates for each experiment

2016-06-15 | E-GEOD-82263 | biostudies-arrayexpress

Shewanella piezotolerans WP3 wild-type strain heat shock for 60 min

Project description:The WP3 strains was cultured at 20Â°C and heat shocked at 40Â°C for 60 min. The transcriptional profiles after and before heat shock were compared. Three biological replicates sample and 6 technical replicates for each experiment

2016-06-15 | E-GEOD-82262 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data