Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

RNA sequencing based analysis of the bacterial transcriptome


ABSTRACT: To investigate the architecture of the E. coli K-12 transcriptome, we used two RNA-Seq technologies to analyze strand-specific transcription at single-nucleotide resolution. We analyzed the data by using an organizational schema to annotate the promoters and terminators that define transcription units across the genome. We found substantial evidence for differential gene expression within complex operons, which we categorized based on operon architecture. E. coli K-12 strain MG1655 substrain BW38028 and isogenic rpoS mutant were cultured in minimal glucose media (carbon, nitrogen, or phosphate limited) and the total transcriptome of log and stationary phase samples was sequenced.

ORGANISM(S): Escherichia coli BW38028

SUBMITTER: James Creecy 

PROVIDER: E-GEOD-58556 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Similar Datasets

2014-07-08 | E-GEOD-52059 | biostudies-arrayexpress
2014-12-11 | GSE58556 | GEO
2014-07-08 | GSE52059 | GEO
2014-02-05 | E-GEOD-46543 | biostudies-arrayexpress
2012-03-14 | E-GEOD-34672 | biostudies-arrayexpress
2014-11-04 | E-GEOD-59468 | biostudies-arrayexpress
2013-12-30 | E-GEOD-24915 | biostudies-arrayexpress
2010-07-13 | E-GEOD-22885 | biostudies-arrayexpress
2016-05-28 | E-GEOD-69350 | biostudies-arrayexpress