Unknown,Transcriptomics,Genomics,Proteomics

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Genome-wide expression erofiling of an in vitro model for studying esophageal epithelial differentiation


ABSTRACT: We used RNA sequencing to identify differentially expressed genes during esophageal epithelial differentiation and in the presence of interleukin 13 using an air-liquid interface culture system. RNA sequencing was performed on a human esophageal epithelial cell line (EPC2-hTERT) grown submerged (day 8) or at the air-liquid interface (ALI) (day 14, untreated or treated with interleukin 13 [100 ng/mL])

ORGANISM(S): Homo sapiens

SUBMITTER: Marc Rothenberg 

PROVIDER: E-GEOD-65335 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

In vitro model for studying esophageal epithelial differentiation and allergic inflammatory responses identifies keratin involvement in eosinophilic esophagitis.

Kc Kiran K   Rothenberg Marc E ME   Sherrill Joseph D JD  

PloS one 20150603 6


Epithelial differentiation is an essential physiological process that imparts mechanical strength and barrier function to squamous epithelia. Perturbation of this process can give rise to numerous human diseases, such as atopic dermatitis, in which antigenic stimuli can penetrate the weakened epithelial barrier to initiate the allergic inflammatory cascade. We recently described a simplified air-liquid interface (ALI) culture system that facilitates the study of differentiated squamous epithelia  ...[more]

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