Unknown,Transcriptomics,Genomics,Proteomics

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High-resolution nucleosome positioning from ATAC-seq chromatin accessibility data


ABSTRACT: We describe the NucleoATAC algorithm for high-resolution nucleosome positioning and occupancy determination using ATAC-seq. ATAC-seq was performed on Saccharomyces cerevisiae and Schizosaccaromyces pombe. Nucleosomes were called for both species as well as for the human GM12878 cell line using data from GSE47753. Additionally, ATAC-seq was performed on S. cerevisiae undergoing an osmotic stress time-course and nucleosomes were called for each time point.

ORGANISM(S): Saccharomyces cerevisiae

SUBMITTER: William Greenleaf 

PROVIDER: E-GEOD-66386 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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