Unknown,Transcriptomics,Genomics,Proteomics

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Ribosomal protein S3: a functional component of NF-kB p65 binding complexes


ABSTRACT: To explore the effects on the NF-kB transcriptome after knockdown of RPS3 in stimulated T cells, we performed microarray assays comparing RPS3-silenced versus NS-treated samples on the same chip. p65-silenced versus NS-treated samples were used as a control. Keywords: time series design Jurkat cells transfected with control siRNA versus RPS3 or p65-siRNA were stimuated with TCR for 1, 3, or 6 hours for a total of 6 arrays.

ORGANISM(S): Homo sapiens

SUBMITTER: Louis Staudt 

PROVIDER: E-GEOD-7231 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Ribosomal protein S3: a KH domain subunit in NF-kappaB complexes that mediates selective gene regulation.

Wan Fengyi F   Anderson D Eric DE   Barnitz Robert A RA   Snow Andrew A   Bidere Nicolas N   Zheng Lixin L   Hegde Vijay V   Lam Lloyd T LT   Staudt Louis M LM   Levens David D   Deutsch Walter A WA   Lenardo Michael J MJ  

Cell 20071101 5


NF-kappaB is a DNA-binding protein complex that transduces a variety of activating signals from the cytoplasm to specific sets of target genes. To understand the preferential recruitment of NF-kappaB to specific gene regulatory sites, we used NF-kappaB p65 in a tandem affinity purification and mass spectrometry proteomic screen. We identified ribosomal protein S3 (RPS3), a KH domain protein, as a non-Rel subunit of p65 homodimer and p65-p50 heterodimer DNA-binding complexes that synergistically  ...[more]

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