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Transcription profiling of silver fox brain selected for tame behavior vs non-selected silver fox

ABSTRACT: Comparison of brain gene expression between silver foxes selected for tame behavior and non-selected silver fox.

INSTRUMENT(S): GenePix Personal 4100A [Axon Instruments]

ORGANISM(S): Vulpes vulpes

SUBMITTER: Peter Saetre

PROVIDER: E-MEXP-451 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Transcription profiling of brain samples from human control and schizophrenia patients who were treated with either typical, atypical or no antipsychotic medication

Project description:Multiple studies have shown that brain gene expression is disturbed in subjects suffering from schizophrenia. However, disentangling disease effects from alterations caused by neuroleptics is a challenging task. <br> To address the issues of disease heterogeneity and the effect of antipsychotic medication, we use a large collection of 110 brain autopsy samples, subdivided according to the type of antipsychotic medication received. We use global and high-resolution mRNA quantification techniques to analyse gene expression in brain tissues. We also analyse transcription in-vitro, in cell lines before and after treatment with cytokines.<br> Results. We show that inflammation-related genes are up regulated in all groups of patients, including those not treated at the time of death. In particular, four co-expressed genes that are inducible by inflammatory cytokines showed increased mRNA levels, namely IFITM2, IFITM3, SERPINA3, and GBP1 (p-values from qPCR ? 0.01). We also show that these genes are expressed in oligodendrocyte and endothelial cell lines, and transcription is inducible by inflammatory cytokines in both cell lines. Our results give molecular support to the inflammatory theory of schizophrenia and suggest that inflammatory cytokines may stimulate transcription in endothelial brain cells during schizophrenia progression. Unexpectedly, inflammation-related genes may also have a role in myelin producing cells, since they are also inducible by cytokines in oligodendrocyte cell lines. Our findings encourage future research to explore whether anti-inflammatory agents can be used in combination with traditional antipsychotics for a more efficient treatment of schizophrenia.

2007-12-06 | E-MEXP-857 | biostudies-arrayexpress

Transcription profiling of occipital cortex tissue from male and female humans, macaques and marmosets to investigate sex differences in primate brain

Project description:We compared gene expression patterns between the occipital cortex tissues of four male and four female individuals in three species: an ape (human, Homo sapiens), an Old World monkey (macaque; Macaca fascicularis), and a New World monkey (marmoset; Callithrix jacchus). To do so, we hybridized cDNA from each sample (n = 24) to a human cDNA microarray that contains 46,128 probes. (Human 46k cDNA, http://www.biotech.kth.se/molbio/microarray/). We used a loop hybridization study design restricted to within-species comparisons only, in which we co-hybridized on each slide samples from the opposite sex.

2008-03-01 | E-MEXP-1182 | biostudies-arrayexpress

RNAi knock down of QKI in human astrocyte glioma cells shows that QKI depletion affects expression of immune response-related genes

Project description:We studied the effect of small interfering RNA (siRNA)-mediated QKI depletion on global gene expression in human oligodendroglioma cells and astrocyte glioma cells

2009-08-18 | E-MEXP-1393 | biostudies-arrayexpress

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Project description:Brain gene expression profiles of homozygous narcoleptic dogs and their heterozygous unaffected siblings

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Project description:Analysis of transcriptional response to UV irradiation in two related crenarchaea, Sulfolobus solfataricus and Sulfolobus acidocaldarius.

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Transcription profiling of synchronized Sulfolobus acidocaldarius populations as they progress through the cell cycle

Project description:Exponentially growing Sulfolobus acidocaldarius were treated with NaAc to generate replication runout and arrest in G2 phase. The cells were then resuspended in fresh acetate-free media which generates a synchronous population. Samples for investigation of gene expression change were taken during the synchronised populations progress through the cell cycle.

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Transcription profiling of Arabidopsis elongating or elongated hypocotyls

Project description:Seeds of A. thaliana were sowed on culture medium poured in Magenta boxes. They were allowed to germinate. Plantlets were in vitro for 5 or 11 days and harvested for RNA extraction.

2007-07-17 | E-MEXP-789 | biostudies-arrayexpress

Transcription profiling of N. gonorrhoeae nmb1650 knockout mutant and parental strains grown in capnoaerobic conditions

Project description:Comparison of N. gonorrhoeae nmb1650 knockout mutant and wild-type parent strains grown in capnoaerobic conditions (normal atmosphere +5% CO2)

2011-05-01 | E-MEXP-1664 | biostudies-arrayexpress

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Project description:Comparison of N. meningitidis nmb1650 knockout mutant and parental strains grown in capnoaerobic conditions (normal atmosphere +5% CO2)

2010-05-01 | E-MEXP-1666 | biostudies-arrayexpress

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Project description:The changes in transcript titers are described for Drosophila Kc167 cells following 5-48 hr treatment with 20-hydroxyecdysone.

2009-05-01 | E-MEXP-1603 | biostudies-arrayexpress

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