Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Whole genome sequencing of BG2 derived adaptors selected from high amount of tunicamycin

ABSTRACT: Approximately 1 million cells of Candida glabrata lab strian BG2 were spread on YPD plate supplemented with 8 ug/ml tunicamycin. Randomly 30 adaptors were chosen. 28 adpators were more tolerant than parent to tunicamycin. These 28 tolerant adaptors, as well as the parent BG2 were sequenced.

INSTRUMENT(S): DNBSEQ-T7

ORGANISM(S): [Candida] glabrata

SUBMITTER: Hao Li

PROVIDER: E-MTAB-12423 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Whole genome sequencing of BG2 derived adaptors selected from sub-inhibitory amount of tunicamycin

Project description:Candida albicans lab strain BG2 was grown in YPD broth supplemented with 0.5ug/ml tunicamycin at 37C for 24h. We used three techinical repeats. The culture was washed, and diluted with distilled water. Then approximately 200 cells from each of the three cultures were spread on YPD plates. Randomly 99 colonies from each culture were tetsted for tolerance to tunicamycin, as compared to the parent BG2. In total we got 6 tolerant adaptors. These 6 adaptors as well as the parent were sequenced.

2022-12-11 | E-MTAB-12427 | biostudies-arrayexpress

DNA-seq of Candida glabrata BG2 derived amphotericin B adaptors

Project description:In this study, BG2 is the wild type Candida glabrata strain. Approximately 1 million cells of BG2 were spread on YPD plate supplemented with 4 ug/ml and 5 ug/ml amphotericin B, respectively. Randomly 18 and 6 adaptors were chosen from 4ug/ml (TJ2873-TJ2890) and 5ug/ml (TJ2891-TJ2896) drug plate, respectively.These adaptors were sequenced.

2023-07-07 | E-MTAB-12546 | biostudies-arrayexpress

Whole genome sequencing of sub-MIC tunicamycin adaptors in Cryptococcus neoformans

Project description:Cryptococcus neoformans lab strain H99 was grown in YPD broth supplemented with 0.0625ug/ml tunicamycin. We did three technical replicates. Randomly 120 colones from each culture were tested for tolerance to tunicamycin. Totally we got 7 tolerant adaptors. These adaptors were sequenced.

2023-07-13 | E-MTAB-12268 | biostudies-arrayexpress

Whole genome sequencing of Candida albicans tunicamycin adaptors

Project description:We used Candida albicans lab strain SC5314 to obtain tunicamycin adaptors. We did whole genome sequencing of the adaptors and the parent as well.

2021-04-24 | E-MTAB-10358 | biostudies-arrayexpress

Whole genome sequecing of Cryptococcus neoformans treated with tunicamycin adaptors

Project description:We exposed Cryptococcus neoformans lab strain H99 to tunicamycin and obtained some adaptors. We did whole genome sequencing of these adaptors as well as the parent.

2021-04-29 | E-MTAB-10356 | biostudies-arrayexpress

Whole genome sequencing of tunicamycin adaptors in Candida parapsilosis

Project description:We exposed Candida parapsilosis clinical isolate #12108 to YPD plate supplemented with 8µg/ml of tunicamycin. We randomly selected 18 adaptors. We did sequencing of these adaptors.

2021-06-07 | E-MTAB-10531 | biostudies-arrayexpress

FY279-TUN-8ug/ml adaptors

Project description:Approximately 1 million cells of Candida auris isolate FY279 were spread on YPD plate supplemented with 8ug/ml tunicamycin. Randomly 21 adaptors were chosen. These adaptors were sequenced.

2023-08-20 | E-MTAB-12496 | biostudies-arrayexpress

Candida auris derived tunicamycin adaptors using high amount of tunicamcyin

Project description:Candida auris reference strain B11221 was spread on YPD plate supplemented with 8 μg/ml tunicamycin. Randomly 25 adaptors (T2080-T2104) were chosen. These adaptors and the parent were sequenced.

2023-10-05 | E-MTAB-12665 | biostudies-arrayexpress

FY279-TUN-4ugml adaptors

Project description:Approximately 1 million cells fo Candida auris isolate FY279 were spread on YPD plate supplemented with 4ug/ml tunicamycin. Randomly 27 adaptors were chosen. These adaptors as well as the parent FY279 were sequenced.

2023-09-15 | E-MTAB-12488 | biostudies-arrayexpress

Whole genome sequencing of tunicamycin adaptors in Candida auris

Project description:Candida auris clade III isolate B11221 was spread on YPD plate supplemented with 8 µg/ml tunicamycin. Randomly 18 adaptors were chosen for further analysis. We did sequencing of these 18 adaptors as well as the parent.

2021-06-17 | E-MTAB-10536 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data