Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Identification of bias in gene expression measurement experiments


ABSTRACT: This experiment uses probes designed to test the influence of various sequence-specific factors on the obtained signal intensities. The factors tested are GC content, distance from the 3'-end of the transcript, occurrence of G-quadruplexes, T7 spacer motif used in oligo-dT primers, and occurrence of (A)n motifs in the transcript sequence. The hybridization was performed using RNA isolated from two cell lines L1236 and HCT116 with 8 replicates each.

ORGANISM(S): Homo sapiens

SUBMITTER: Roman Jaksik 

PROVIDER: E-MTAB-12450 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Similar Datasets

2010-04-08 | E-GEOD-14409 | biostudies-arrayexpress
2010-12-09 | E-GEOD-23591 | biostudies-arrayexpress
2014-09-24 | E-GEOD-51813 | biostudies-arrayexpress
2014-09-24 | E-GEOD-51726 | biostudies-arrayexpress
2017-10-26 | PXD001978 | Pride
2018-04-25 | PXD008076 | Pride
2013-04-01 | E-GEOD-40873 | biostudies-arrayexpress
2024-09-05 | PXD052701 | Pride
2022-02-15 | PXD020288 | Pride
2020-09-28 | PXD020444 | Pride