Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

TJ1843 derived amphotericin B (8ug/ml) adaptors

ABSTRACT: In this project, H99 is the wild type Cryptococcus neoformans strain. TJ1843 is a strain with segmental disomy of chromosome 11. TJ1843 is a derivative of H99. Approximately 1 million cells of TJ1843 were spread on YPD plate supplemented with 8 ug/ml amphotericin B. Randomly 27 adaptors (TJ3409-TJ3435) were chosen. These adaptors were sequenced.

INSTRUMENT(S): DNBSEQ-T7

ORGANISM(S): Cryptococcus neoformans var. grubii H99

SUBMITTER: Hao Li

PROVIDER: E-MTAB-12566 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Transcriptome analysis of uniconazole adaptors in Cryptoccus neoformans

Project description:C. neoformans lab strain H99 was used to obtain uniconazole adaptors. Transcriptomes of 6 adaptors, each bearing a unique karyotype, were compared to the wild type H99.

2024-05-30 | E-MTAB-14094 | biostudies-arrayexpress

H99 derived uniconzole (0.25ug/mL and 2ug/mL) adaptors

Project description:H99 derived 2 ug/mL uniconazole adaptors: Approximately 1 million cells of Crypotoccus neoformans lab strain H99 were spread on YPD-agar plate supplemented with 2 ug/mL uniconazole. After 5 days incubation of the plate at 30℃, randomly 30 adaptors were chosen. 21 adaptors were resistant and were sequenced. H99 derived 0.25 ug/mL uniconazole adaptors: Cells of H99 were adjusted to 2500 cells/mL. The culture was supplemented with 0.25 ug/mL uniconazole. After 72 h incubation, the culture was washed, diluted and approximately 200 cells were spread on YPD-agar plate. Randomly 95 colonies were tested for resistance to uniconazole. One colony (TJ3832) was resistant and was sequenced.

2024-04-30 | E-MTAB-14025 | biostudies-arrayexpress

Cryptococcus neoformans strain TJ1854 derived amphotericin B adaptors

Project description:In this study, H99 is a wild type Cryptococcus neoformans strain. TJ1854 is a chromosome 4 disomy strain derived from H99. Approximately 1 million cells of TJ1854 were spread on YPD plate supplemented with 6ug/ml amphtericin B. Randomlyh 27 adaptors (TJ2487-TJ2513) were chosen. These adaptors were sequenced.

2023-03-15 | E-MTAB-12480 | biostudies-arrayexpress

TJ1854 derived flucnaozle adaptors

Project description:In Cryptococcus neoformans, H99 is the wild type. TJ1854 is the chromosome 4 disomy strain dervied from H99. In this study, approximately 1 million cells of TJ1854 were spread on YPD plate supplemented with 32ug/ml fluconazole. Randomly 27 adaptors (TJ3249-TJ3275) were chosen. These adaptors were sequenced.

2023-08-25 | E-MTAB-12478 | biostudies-arrayexpress

Whole genome sequencing of tebuconazole adaptors in Cryptococcus neoformans

Project description:Cryptococcus neoformans lab strain H99 was spread on YPD plates supplementded with 1.5ug/ml and 2ug/ml of tebuconazole. Randomly 30 (T364-T393) and 29 (T394-T422) adaptors were chosen from 1.5ug/ml and 2ug/ml drug plate, respectively, All the 59 adaptors as well as the parent H99 were sequenced.

2023-05-09 | E-MTAB-12419 | biostudies-arrayexpress

Whole genome sequencing of amphotericin B adaptors in Cryptocooccus neoformans

Project description:We exposed Cryptococcus neoformans lab strain H99 to amphtericin B and obtained some adaptors. We did sequencing of these adaptors.

2021-03-12 | E-MTAB-10172 | biostudies-arrayexpress

Cryptococcus neoformans TJ1843 DNA-seq derived fluconazole adaptors

Project description:In Cryptococcus neoformans, H99 is the wild type. TJ1843 is a strains with segmental disomy of chromosome 11, which is derived from H99. In this study, approximately 1 million cells of TJ1843 were spread on YPD plate supplemented with 32 ug/ml fluconazole. Randomly 27 adaptors (TJ3305 and TJ3331) were chosen. These adaptors were sequenced.

2023-08-17 | E-MTAB-12540 | biostudies-arrayexpress

Whole genome sequencing of pyraclostrobin adaptors in Cryptococcus neoformans

Project description:Cryptococcus neoformans lab strain H99 was spread on YPD plate supplemented with 1.5ug/ml pyraclostrobin. Randomly 23 adaptors were chosen. These adaptors were sequenced.

2023-04-06 | E-MTAB-12415 | biostudies-arrayexpress

Whole genome sequencing of aureobasidin A adaptors in Cryptococcus neoformans

Project description:Cryptococcus neoformans lab strain H99 was exposed to 600ng/ml aureobasidin A. Randomly 30 adaptors were chosen. These adaptors and the wild type strains were sequenced.

2023-02-08 | E-MTAB-12319 | biostudies-arrayexpress

Whole genome sequecing of Cryptococcus neoformans treated with tunicamycin adaptors

Project description:We exposed Cryptococcus neoformans lab strain H99 to tunicamycin and obtained some adaptors. We did whole genome sequencing of these adaptors as well as the parent.

2021-04-29 | E-MTAB-10356 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data