Unknown,Transcriptomics,Genomics,Proteomics

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Genome-wide analysis of Gata3 [ChIP-seq and RNA-seq]


ABSTRACT: Shh and its receptor Ptch1 define two adjacent mutually exclusive domains: Shh+Ptch1- and Shh-Ptch1+ of E11.5 mouse brain. Gata3 ChIP-seq experiments and RNA-seq assays on Gata3-knockdown cells revealed that Gata3 up-regulates genes enriched in Shh-Ptch1+ domain. Our work is the first genome-wide characterization of gene regulatory mechanisms in Shh pathway underlying the pattern formation of early mouse brain.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Rattus norvegicus

SUBMITTER: Jinhua Liu 

PROVIDER: E-MTAB-2008 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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