Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

38 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pombe_wild_type_total_RNA

ABSTRACT: We RNA-Seq to total RNA extracted from vegetatively growing S. pombe cells.

INSTRUMENT(S): Illumina NextSeq 500

ORGANISM(S): Schizosaccharomyces pombe

SUBMITTER: Juan Mata

PROVIDER: E-MTAB-2470 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Pombe_RBP_profiling

Project description:RNA-Seq from vegetatively growing S. pombe cells carrying mutation in RNA-binding protein genes

2014-12-01 | E-MTAB-2695 | biostudies-arrayexpress

Pombe_ribosome_profiling_vegetative_cells

Project description:We applied in parallel RNA-Seq and Ribosome-profiling to vegetatively growing S. pombe cells. Two independent biological repeats were performed.

2014-06-03 | E-MTAB-2176 | biostudies-arrayexpress

Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation

Project description:Study aims at investigating the translational response of S. pombe cells to amino acid starvation

2018-02-01 | E-MTAB-5810 | biostudies-arrayexpress

Pombe_ribosome_profiling_pat1_meiotic_cells

Project description:We applied in parallel RNA-Seq and Ribosome-profiling to S. pombe pat1 diploids undergoing meiosis and sporulation in a synchronous manner

2014-06-03 | E-MTAB-2179 | biostudies-arrayexpress

Pombe_ribosome_profiling_pat1_meiotic_cells

Project description:We applied in parallel RNA-Seq and Ribosome-profiling to S. pombe pat1 diploids undergoing meiosis and sporulation in a synchronous manner

2014-06-03 | E-MTAB-2265 | biostudies-arrayexpress

Phenotypic analysis of the fil1 transcription factor from S. pombe

Project description:RNA-seq of fil1 and wilt type mutants in different conditions

2018-02-01 | E-MTAB-5601 | biostudies-arrayexpress

Transcription profiling of logarithmically growing fission yeast

Project description:To estimate mRNA steady-state levels we used RNA extracted from logarithmically growing fisson yeast cells on Affymetrix Yeast 2.0 Genechip arrays. The signal intensities from two independent biological repeats were averaged, resulting in measurements for 4818 out of 4962 nuclear protein-coding genes.

2007-03-22 | E-TABM-220 | biostudies-arrayexpress

Transcription profiling of fission yeast mRNAs at different times after blocking transcription to estimate mRNA half-lives

Project description:We estimated global mRNA half-lives by blocking transcription and measuring mRNA levels at different times after transcriptional shut-off.

2008-02-05 | E-TABM-218 | biostudies-arrayexpress

Transcription profiling by high throughput sequencing of Schizosaccharomyces pombe transcriptome during both proliferation and quiescence

Project description:Data on absolute molecule numbers are rare but will empower the modeling, understanding and comparison of cellular functions and biological systems. We quantified transcriptomes and proteomes in fission yeast during both proliferation and quiescence. This rich resource provides the first comprehensive reference for all RNA and most protein concentrations in a eukaryote under key physiological conditions. This integrated dataset will support quantitative biology and afford unique biological insights into cell regulation. While mRNAs are typically expressed in a narrow range above 1 copy/cell, most long non-coding RNAs, except for a specific subset, are strongly repressed below 1 copy/cell. Cell cycle-regulated transcription tunes mRNA numbers to phase-specific requirements but can also lead to switch-like expression. Proteins greatly exceed mRNAs in abundance and dynamic range, and their numbers scales with functional demands. Upon transition to quiescence, the proteome composition changes substantially but, in stark contrast to mRNAs, proteins do not uniformly decrease but scale with cell volume.

2012-10-26 | E-MTAB-1154 | biostudies-arrayexpress

Effect of fil1 deletion on stress responses in Schizosaccharomyces pombe

Project description:Investigation into the role of the S. pombe Fil1 transcription factor in multiple stress responses.

2020-11-18 | E-MTAB-8583 | biostudies-arrayexpress