Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

48 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Total and nuclear RNA-seq of whole-embryo and mesodermal cells

ABSTRACT: Whole-transcriptome analysis using total RNA-seq (rRNA depleted) of Drosophila melanogaster samples from whole-embryo or mesodermal FACS-sorted cells (using a transgenic fly line expressing a EGFP-tagged protein in mesoderm, during different stages of early embryonic development.

ORGANISM(S): Drosophila melanogaster

SUBMITTER: Charles Girardot

PROVIDER: E-MTAB-4069 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

CAGE on Drosophila mesodermal and whole embryo samples

Project description:5'Cap-Analysis of Gene Expression (5' CAGE) from mesodermal and whole embryo RNA at three different time intervals during development.

2018-10-24 | E-MTAB-4070 | biostudies-arrayexpress

CAGE on Drosophila mesodermal embryo samples

Project description:5'Cap-Analysis of Gene Expression (5' CAGE) from mesodermal and whole embryo RNA at three different time intervals during development.

2018-03-07 | E-MTAB-6159 | biostudies-arrayexpress

Transcription profiling of Arabidopsis floral stem development

Project description:The aim of the experiment was to analyse the modification of the change in expression of genes encoding enzymes involved in the modification of cell wall polysaccharide structure during development.

2005-03-01 | E-MEXP-187 | biostudies-arrayexpress

Transcription profiling of Arabidopsis cells to iron stress

Project description:After 7 days under normal culture conditions, an iron stress was imposed by addition of iron citrate (500 uM final concentration). This time constituted the time zero (T0) of the time-course experiment. Cells were collected from separate Erlenmeyer flasks at times T0, T+5 min, T+15 min, T+30 min, T+60 min, T+6 h, and T+24h. After filtration, cells were washed with water twice, frozen in liquid nitrogen and stored at 80C before processing for RNA extraction.

2005-01-16 | E-MEXP-212 | biostudies-arrayexpress

Transcription profiling of Arabidopsis CYP98A3 knockout mutant

Project description:TDNA insertion mutants in CYP98A3 were produced by K. Feldmann, and studied through transcriptomic analysis against the wild type WS (specific insertion was checked by PCR and segregation analysis). Characterization of knockout mutants for P450s can be very helpful to fully understand the function of the disrupted gene, and is expected to generate information about the molecular basis of mutants phenotype.

2005-04-29 | E-MEXP-198 | biostudies-arrayexpress

Transcription profiling of irradiated Arabidopsis wild type samples

Project description:A functional study of genes that might play a role in DNA repair/recombination and in the response to oxidative stress (Microarrays expression studies, Microbiological assays, In planta functional studies). Which Arabidopsis thaliana genes are induced by ionising radiations? Comparison of SADE transcriptome data (Af1999083) and micro-arrays transcriptome data.

2005-05-15 | E-MEXP-220 | biostudies-arrayexpress

Transcription profiling of Arabidopsis gamma irradiated vs non irradiated 3 or 4 days old seedlings

Project description:gamma rays irradiated vs non irradiated 3 or 4 days old seedlings

2005-03-15 | E-MEXP-234 | biostudies-arrayexpress

Transcription profiling of Arabidopsis seedlings of ATM mutant time course: 0.75h, 1.5h, 3h, 5h dose:gamma rays irradiated vs non irradiated 4 days old seedlings

Project description:which Arabidopsis thaliana genes are induced by ionising radiations? time course: 0.75h, 1.5h, 3h, 5h dose:gamma rays irradiated vs non irradiated 4 days old seedlings

2005-05-15 | E-MEXP-235 | biostudies-arrayexpress

Transcription profiling of Arabidopsis 100 Gray irradiated wild type vs non irradiated Wild Type comparison irradiated mutant and ATM vs non irradiated mutant ATM

Project description:Seedlings were given a dose of 100 Gray with a 60 cobalt source at a dose rate of 22 gray min -1 comparison irradiated Wild Type vs non irradiated Wild Type comparison irradiated mutant ATM vs non irradiated mutant ATM

2005-03-15 | E-MEXP-236 | biostudies-arrayexpress

Chromatin immunoprecipitation of Drosophila DNA to identify nucleosomes bound by RNA polymerase II

Project description:Crosslinked chromatin was digested with Micrococcal nuclease and immunopurified for Rpb3, a subunit of RNA Polyermase II. chIP'd DNA was hybridized to Drosophila tiling arrays and nucleosomes that were bound by Pol II were mapped.

2008-05-20 | E-MEXP-1515 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data