Oryza sativa Raw sequence reads
Ontology highlight
ABSTRACT:
INSTRUMENT(S): Illumina HiSeq 1000
ORGANISM(S): Oryza sativa Japonica Group
SUBMITTER: David Secco
PROVIDER: E-MTAB-4347 | biostudies-arrayexpress |
REPOSITORIES: biostudies-arrayexpress
Publications
Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements.
Secco David D Wang Chuang C Shou Huixia H Schultz Matthew D MD Chiarenza Serge S Nussaume Laurent L Ecker Joseph R JR Whelan James J Lister Ryan R
eLife 20150721
Cytosine DNA methylation (mC) is a genome modification that can regulate the expression of coding and non-coding genetic elements. However, little is known about the involvement of mC in response to environmental cues. Using whole genome bisulfite sequencing to assess the spatio-temporal dynamics of mC in rice grown under phosphate starvation and recovery conditions, we identified widespread phosphate starvation-induced changes in mC, preferentially localized in transposable elements (TEs) close ...[more]
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