Unknown,Transcriptomics,Genomics,Proteomics

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Transcriptome Analysis of the potato (genotype RH89-039-16)

ABSTRACT: Transcriptome Analysis of the potato (genotype RH89-039-16). To aid annotation and address a series of biological questions, we generated RNA-Seq data from 16 RH libraries representing all major tissue types, developmental stages and responses to abiotic and biotic stresses.

ORGANISM(S): Solanum tuberosum

SUBMITTER: Mads Soenderkaer 

PROVIDER: E-MTAB-552 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Genome sequence and analysis of the tuber crop potato.

Xu Xun X   Pan Shengkai S   Cheng Shifeng S   Zhang Bo B   Mu Desheng D   Ni Peixiang P   Zhang Gengyun G   Yang Shuang S   Li Ruiqiang R   Wang Jun J   Wang Jun J   Orjeda Gisella G   Guzman Frank F   Torres Michael M   Lozano Roberto R   Ponce Olga O   Martinez Diana D   De la Cruz Germán G   Chakrabarti S K SK   Patil Virupaksh U VU   Skryabin Konstantin G KG   Kuznetsov Boris B BB   Ravin Nikolai V NV   Kolganova Tatjana V TV   Beletsky Alexey V AV   Mardanov Andrei V AV   Di Genova Alex A   Bolser Daniel M DM   Martin David M A DM   Li Guangcun G   Yang Yu Y   Kuang Hanhui H   Hu Qun Q   Xiong Xingyao X   Bishop Gerard J GJ   Sagredo Boris B   Mejía Nilo N   Zagorski Wlodzimierz W   Gromadka Robert R   Gawor Jan J   Szczesny Pawel P   Huang Sanwen S   Zhang Zhonghua Z   Liang Chunbo C   He Jun J   Li Ying Y   He Ying Y   Xu Jianfei J   Zhang Youjun Y   Xie Binyan B   Du Yongchen Y   Qu Dongyu D   Bonierbale Merideth M   Ghislain Marc M   Herrera Maria del Rosario Mdel R   Giuliano Giovanni G   Pietrella Marco M   Perrotta Gaetano G   Facella Paolo P   O'Brien Kimberly K   Feingold Sergio E SE   Barreiro Leandro E LE   Massa Gabriela A GA   Diambra Luis L   Whitty Brett R BR   Vaillancourt Brieanne B   Lin Haining H   Massa Alicia N AN   Geoffroy Michael M   Lundback Steven S   DellaPenna Dean D   Buell C Robin CR   Sharma Sanjeev Kumar SK   Marshall David F DF   Waugh Robbie R   Bryan Glenn J GJ   Destefanis Marialaura M   Nagy Istvan I   Milbourne Dan D   Thomson Susan J SJ   Fiers Mark M   Jacobs Jeanne M E JM   Nielsen Kåre L KL   Sønderkær Mads M   Iovene Marina M   Torres Giovana A GA   Jiang Jiming J   Veilleux Richard E RE   Bachem Christian W B CW   de Boer Jan J   Borm Theo T   Kloosterman Bjorn B   van Eck Herman H   Datema Erwin E   Hekkert Bas te Lintel Bt   Goverse Aska A   van Ham Roeland C H J RC   Visser Richard G F RG  

Nature 20110710 7355

Potato (Solanum tuberosum L.) is the world's most important non-grain food crop and is central to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and suffers acute inbreeding depression. Here we use a homozygous doubled-monoploid potato clone to sequence and assemble 86% of the 844-megabase genome. We predict 39,031 protein-coding genes and present evidence for at least two genome duplication events indicative of a palaeopolyploid origin. As the first genome  ...[more]

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