Unknown,Transcriptomics,Genomics,Proteomics

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RNA-seq of wild-type and Tbx20 homozygous knockout E11.5 mouse cardiomyocytes to study Tbx20's roles in embryonic and adult mouse heart function


ABSTRACT: Tbx20 is a transcription factor known to play important roles in embryonic and adult mouse heart function. Our goal in this work was to better understand the function of this gene in embryonic (E11.5) mouse cardiomyocytes that form the developing chambers, expanding our knowledge of its role in heart development. To elucidate the role of Tbx20 in mouse cardiomyocytes, we generated conditional Tbx20 knockout and compared 4 samples with 4 samples of wild-type cardiomyocytes. We found evidence of regulation of cell cycle genes by Tbx20, which are involved in proliferation. In addition, Tbx20 seems to bind and regulate an enhancer of CoupTFII in the atrium, a gene involved in atrial development.

INSTRUMENT(S): Illumina HiSeq 2500

ORGANISM(S): Mus musculus

SUBMITTER: Noboru Sakabe 

PROVIDER: E-MTAB-5596 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Probing chromatin landscape reveals roles of endocardial TBX20 in septation.

Boogerd Cornelis J CJ   Aneas Ivy I   Sakabe Noboru N   Dirschinger Ralph J RJ   Cheng Quen J QJ   Zhou Bin B   Chen Ju J   Nobrega Marcelo A MA   Evans Sylvia M SM  

The Journal of clinical investigation 20160627 8


Mutations in the T-box transcription factor TBX20 are associated with multiple forms of congenital heart defects, including cardiac septal abnormalities, but our understanding of the contributions of endocardial TBX20 to heart development remains incomplete. Here, we investigated how TBX20 interacts with endocardial gene networks to drive the mesenchymal and myocardial movements that are essential for outflow tract and atrioventricular septation. Selective ablation of Tbx20 in murine endocardial  ...[more]

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