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RNA-seq data for a comparative transcriptome study of Sorghum bicolor BTX623

ABSTRACT: We selected 11 tissues from sorghum reference genome line BTX623 for comparative study between Maize and sorghum. These 11 tissues were selected at different development stages at Cold Spring Harbor Laboratory upland farm, RNA were extracted, library was made and sequenced on HiSeq2500 PE125 platform at Woodbury Genome Center.

INSTRUMENT(S): Illumina HiSeq 2500

ORGANISM(S): Sorghum bicolor

SUBMITTER: Bo Wang

PROVIDER: E-MTAB-5956 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing.

Wang Bo B Regulski Michael M Tseng Elizabeth E Olson Andrew A Goodwin Sara S McCombie W Richard WR Ware Doreen D

Genome research 20180430 6

Maize and sorghum are both important crops with similar overall plant architectures, but they have key differences, especially in regard to their inflorescences. To better understand these two organisms at the molecular level, we compared expression profiles of both protein-coding and noncoding transcripts in 11 matched tissues using single-molecule, long-read, deep RNA sequencing. This comparative analysis revealed large numbers of novel isoforms in both species. Evolutionarily young genes were ...[more]

PMID: 29712755

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