Dataset Information
ATAC-seq of oesophageal adenocarcinoma cell line MFD-1
Ontology highlight
ABSTRACT:
INSTRUMENT(S): Illumina HiSeq 3000
ORGANISM(S): Homo sapiens
SUBMITTER: Connor Rogerson
PROVIDER: E-MTAB-6720 | biostudies-arrayexpress |
REPOSITORIES: biostudies-arrayexpress
Publications
Authentication and characterisation of a new oesophageal adenocarcinoma cell line: MFD-1.
Scientific reports 20160907
New biological tools are required to understand the functional significance of genetic events revealed by whole genome sequencing (WGS) studies in oesophageal adenocarcinoma (OAC). The MFD-1 cell line was isolated from a 55-year-old male with OAC without recombinant-DNA transformation. Somatic genetic variations from MFD-1, tumour, normal oesophagus, and leucocytes were analysed with SNP6. WGS was performed in tumour and leucocytes. RNAseq was performed in MFD-1, and two classic OAC cell lines F ...[more]
