Dataset Information

PiNGO: a Cytoscape plugin to find candidate genes in biological networks.

ABSTRACT: PiNGO is a tool to screen biological networks for candidate genes, i.e. genes predicted to be involved in a biological process of interest. The user can narrow the search to genes with particular known functions or exclude genes belonging to particular functional classes. PiNGO provides support for a wide range of organisms and Gene Ontology classification schemes, and it can easily be customized for other organisms and functional classifications. PiNGO is implemented as a plugin for Cytoscape, a popular network visualization platform.PiNGO is distributed as an open-source Java package under the GNU General Public License (http://www.gnu.org/), and can be downloaded via the Cytoscape plugin manager. A detailed user guide and tutorial are available on the PiNGO website (http://www.psb.ugent.be/esb/PiNGO.

SUBMITTER: Smoot M

PROVIDER: S-EPMC3065683 | biostudies-literature | 2011 Apr

REPOSITORIES: biostudies-literature

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Publications

PiNGO: a Cytoscape plugin to find candidate genes in biological networks.

Smoot Michael M Ono Keiichiro K Ideker Trey T Maere Steven S

Bioinformatics (Oxford, England) 20110128 7

<h4>Unlabelled</h4>PiNGO is a tool to screen biological networks for candidate genes, i.e. genes predicted to be involved in a biological process of interest. The user can narrow the search to genes with particular known functions or exclude genes belonging to particular functional classes. PiNGO provides support for a wide range of organisms and Gene Ontology classification schemes, and it can easily be customized for other organisms and functional classifications. PiNGO is implemented as a plu ...[more]

PMID: 21278188

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Dataset Information

PiNGO: a Cytoscape plugin to find candidate genes in biological networks.

Publications

PiNGO: a Cytoscape plugin to find candidate genes in biological networks.

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