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EPR spin trapping of an oxalate-derived free radical in the oxalate decarboxylase reaction.

ABSTRACT: EPR spin trapping experiments on bacterial oxalate decarboxylase from Bacillus subtilis under turn-over conditions are described. The use of doubly (13)C-labeled oxalate leads to a characteristic splitting of the observed radical adducts using the spin trap N-tert-butyl-?-phenylnitrone linking them directly to the substrate. The radical was identified as the carbon dioxide radical anion which is a key intermediate in the hypothetical reaction mechanism of both decarboxylase and oxidase activities. X-ray crystallography had identified a flexible loop, SENS161-4, which acts as a lid to the putative active site. Site directed mutagenesis of the hinge amino acids, S161 and T165 was explored and showed increased radical trapping yields compared to the wild type. In particular, T165V shows approximately ten times higher radical yields while at the same time its decarboxylase activity was reduced by about a factor of ten. This mutant lacks a critical H-bond between T165 and R92 resulting in compromised control over its radical chemistry allowing the radical intermediate to leak into the surrounding solution.

SUBMITTER: Imaram W

PROVIDER: S-EPMC3070241 | biostudies-literature | 2011 Apr

REPOSITORIES: biostudies-literature

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EPR spin trapping of an oxalate-derived free radical in the oxalate decarboxylase reaction.

Imaram Witcha W Saylor Benjamin T BT Centonze Christopher P CP Richards Nigel G J NG Angerhofer Alexander A

Free radical biology & medicine 20110126 8

EPR spin trapping experiments on bacterial oxalate decarboxylase from Bacillus subtilis under turn-over conditions are described. The use of doubly (13)C-labeled oxalate leads to a characteristic splitting of the observed radical adducts using the spin trap N-tert-butyl-α-phenylnitrone linking them directly to the substrate. The radical was identified as the carbon dioxide radical anion which is a key intermediate in the hypothetical reaction mechanism of both decarboxylase and oxidase activitie ...[more]

PMID: 21277974

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Project description:Recently, we showed that peroxynitrite (ONOO(-)) reacts directly and rapidly with aromatic and aliphatic boronic acids (k ? 10(6) M(-1)s(-1)). Product analyses and substrate consumption data indicated that ONOO(-) reacts stoichiometrically with boronates, yielding the corresponding phenols as the major product (?85-90%), and the remaining products (10-15%) were proposed to originate from free radical intermediates (phenyl and phenoxyl radicals). Here, we investigated in detail the minor, free radical pathway of boronate reaction with ONOO(-). The electron paramagnetic resonance (EPR) spin-trapping technique was used to characterize the free radical intermediates formed from the reaction between boronates and ONOO(-). Using 2-methyl-2-nitrosopropane (MNP) and 5-diethoxyphosphoryl-5-methyl-1-pyrroline-N-oxide (DEPMPO) spin traps, phenyl radicals were trapped and detected. Although phenoxyl radicals were not detected, the positive effects of molecular oxygen, and inhibitory effects of hydrogen atom donors (acetonitrile, and 2-propanol) and general radical scavengers (GSH, NADH, ascorbic acid, and tyrosine) on the formation of phenoxyl radical-derived nitrated product, suggest that the phenoxyl radical was formed as the secondary species. We propose that the initial step of the reaction involves the addition of ONOO(-) to the boron atom in boronates. The anionic intermediate undergoes both heterolytic (major pathway) and homolytic (minor pathway) cleavage of the peroxy (O-O) bond to form phenol and nitrite as a major product (via a nonradical mechanism), or a radical pair PhB(OH)(2)O(•-)···(•)NO(2) as a minor product. It is conceivable that phenyl radicals are formed by the fragmentation of the PhB(OH)(2)O(•-) radical anion. According to the DFT quantum mechanical calculations, the energy barrier for the dissociation of PhB(OH)(2)O(•-) radical anion to form phenyl radical is only a few kcal/mol, suggesting rapid and spontaneous fragmentation of the PhB(OH)(2)O(•-) radical anion in aqueous media. Biological implications of the minor free radical pathway are discussed in the context of ONOO(-) detection, using the boronate probes.

Dataset Information

EPR spin trapping of an oxalate-derived free radical in the oxalate decarboxylase reaction.

Publications

EPR spin trapping of an oxalate-derived free radical in the oxalate decarboxylase reaction.

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