RuleBender: a visual interface for rule-based modeling.
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ABSTRACT: Summary
Rule-based modeling (RBM) is a powerful and increasingly popular approach to modeling intracellular biochemistry. Current interfaces for RBM are predominantly text-based and command-line driven. Better visual tools are needed to make RBM accessible to a broad range of users, to make specification of models less error prone and to improve workflows. We present RULEBENDER, an open-source visual interface that facilitates interactive debugging, simulation and analysis of RBMs.Availability
RULEBENDER is freely available for Mac, Windows and Linux at http://rulebender.org.
SUBMITTER: Xu W
PROVIDER: S-EPMC3106190 | biostudies-literature | 2011 Jun
REPOSITORIES: biostudies-literature
Publications
RuleBender: a visual interface for rule-based modeling.
Xu Wen W Smith Adam M AM Faeder James R JR Marai G Elisabeta GE
Bioinformatics (Oxford, England) 20110414 12
<h4>Summary</h4>Rule-based modeling (RBM) is a powerful and increasingly popular approach to modeling intracellular biochemistry. Current interfaces for RBM are predominantly text-based and command-line driven. Better visual tools are needed to make RBM accessible to a broad range of users, to make specification of models less error prone and to improve workflows. We present RULEBENDER, an open-source visual interface that facilitates interactive debugging, simulation and analysis of RBMs.<h4>Av ...[more]
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