Ontology highlight
ABSTRACT:
SUBMITTER: Huang X
PROVIDER: S-EPMC310812 | biostudies-literature | 1999 Sep
REPOSITORIES: biostudies-literature
We describe the third generation of the CAP sequence assembly program. The CAP3 program includes a number of improvements and new features. The program has a capability to clip 5' and 3' low-quality regions of reads. It uses base quality values in computation of overlaps between reads, construction of multiple sequence alignments of reads, and generation of consensus sequences. The program also uses forward-reverse constraints to correct assembly errors and link contigs. Results of CAP3 on four ...[more]