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The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.


ABSTRACT: Infectious and inflammatory diseases have repeatedly shown strong genetic associations within the major histocompatibility complex (MHC); however, the basis for these associations remains elusive. To define host genetic effects on the outcome of a chronic viral infection, we performed genome-wide association analysis in a multiethnic cohort of HIV-1 controllers and progressors, and we analyzed the effects of individual amino acids within the classical human leukocyte antigen (HLA) proteins. We identified >300 genome-wide significant single-nucleotide polymorphisms (SNPs) within the MHC and none elsewhere. Specific amino acids in the HLA-B peptide binding groove, as well as an independent HLA-C effect, explain the SNP associations and reconcile both protective and risk HLA alleles. These results implicate the nature of the HLA-viral peptide interaction as the major factor modulating durable control of HIV infection.

SUBMITTER: International HIV Controllers Study 

PROVIDER: S-EPMC3235490 | biostudies-literature | 2010 Dec

REPOSITORIES: biostudies-literature

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The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.

Pereyra Florencia F   Jia Xiaoming X   McLaren Paul J PJ   Telenti Amalio A   de Bakker Paul I W PI   Walker Bruce D BD   Ripke Stephan S   Brumme Chanson J CJ   Pulit Sara L SL   Carrington Mary M   Kadie Carl M CM   Carlson Jonathan M JM   Heckerman David D   Graham Robert R RR   Plenge Robert M RM   Deeks Steven G SG   Gianniny Lauren L   Crawford Gabriel G   Sullivan Jordan J   Gonzalez Elena E   Davies Leela L   Camargo Amy A   Moore Jamie M JM   Beattie Nicole N   Gupta Supriya S   Crenshaw Andrew A   Burtt Noël P NP   Guiducci Candace C   Gupta Namrata N   Gao Xiaojiang X   Qi Ying Y   Yuki Yuko Y   Piechocka-Trocha Alicja A   Cutrell Emily E   Rosenberg Rachel R   Moss Kristin L KL   Lemay Paul P   O'Leary Jessica J   Schaefer Todd T   Verma Pranshu P   Toth Ildiko I   Block Brian B   Baker Brett B   Rothchild Alissa A   Lian Jeffrey J   Proudfoot Jacqueline J   Alvino Donna Marie L DM   Vine Seanna S   Addo Marylyn M MM   Allen Todd M TM   Altfeld Marcus M   Henn Matthew R MR   Le Gall Sylvie S   Streeck Hendrik H   Haas David W DW   Kuritzkes Daniel R DR   Robbins Gregory K GK   Shafer Robert W RW   Gulick Roy M RM   Shikuma Cecilia M CM   Haubrich Richard R   Riddler Sharon S   Sax Paul E PE   Daar Eric S ES   Ribaudo Heather J HJ   Agan Brian B   Agarwal Shanu S   Ahern Richard L RL   Allen Brady L BL   Altidor Sherly S   Altschuler Eric L EL   Ambardar Sujata S   Anastos Kathryn K   Anderson Ben B   Anderson Val V   Andrady Ushan U   Antoniskis Diana D   Bangsberg David D   Barbaro Daniel D   Barrie William W   Bartczak J J   Barton Simon S   Basden Patricia P   Basgoz Nesli N   Bazner Suzane S   Bellos Nicholaos C NC   Benson Anne M AM   Berger Judith J   Bernard Nicole F NF   Bernard Annette M AM   Birch Christopher C   Bodner Stanley J SJ   Bolan Robert K RK   Boudreaux Emilie T ET   Bradley Meg M   Braun James F JF   Brndjar Jon E JE   Brown Stephen J SJ   Brown Katherine K   Brown Sheldon T ST   Burack Jedidiah J   Bush Larry M LM   Cafaro Virginia V   Campbell Omobolaji O   Campbell John J   Carlson Robert H RH   Carmichael J Kevin JK   Casey Kathleen K KK   Cavacuiti Chris C   Celestin Gregory G   Chambers Steven T ST   Chez Nancy N   Chirch Lisa M LM   Cimoch Paul J PJ   Cohen Daniel D   Cohn Lillian E LE   Conway Brian B   Cooper David A DA   Cornelson Brian B   Cox David T DT   Cristofano Michael V MV   Cuchural George G   Czartoski Julie L JL   Dahman Joseph M JM   Daly Jennifer S JS   Davis Benjamin T BT   Davis Kristine K   Davod Sheila M SM   DeJesus Edwin E   Dietz Craig A CA   Dunham Eleanor E   Dunn Michael E ME   Ellerin Todd B TB   Eron Joseph J JJ   Fangman John J W JJ   Farel Claire E CE   Ferlazzo Helen H   Fidler Sarah S   Fleenor-Ford Anita A   Frankel Renee R   Freedberg Kenneth A KA   French Neel K NK   Fuchs Jonathan D JD   Fuller Jon D JD   Gaberman Jonna J   Gallant Joel E JE   Gandhi Rajesh T RT   Garcia Efrain E   Garmon Donald D   Gathe Joseph C JC   Gaultier Cyril R CR   Gebre Wondwoosen W   Gilman Frank D FD   Gilson Ian I   Goepfert Paul A PA   Gottlieb Michael S MS   Goulston Claudia C   Groger Richard K RK   Gurley T Douglas TD   Haber Stuart S   Hardwicke Robin R   Hardy W David WD   Harrigan P Richard PR   Hawkins Trevor N TN   Heath Sonya S   Hecht Frederick M FM   Henry W Keith WK   Hladek Melissa M   Hoffman Robert P RP   Horton James M JM   Hsu Ricky K RK   Huhn Gregory D GD   Hunt Peter P   Hupert Mark J MJ   Illeman Mark L ML   Jaeger Hans H   Jellinger Robert M RM   John Mina M   Johnson Jennifer A JA   Johnson Kristin L KL   Johnson Heather H   Johnson Kay K   Joly Jennifer J   Jordan Wilbert C WC   Kauffman Carol A CA   Khanlou Homayoon H   Killian Robert K RK   Kim Arthur Y AY   Kim David D DD   Kinder Clifford A CA   Kirchner Jeffrey T JT   Kogelman Laura L   Kojic Erna Milunka EM   Korthuis P Todd PT   Kurisu Wayne W   Kwon Douglas S DS   LaMar Melissa M   Lampiris Harry H   Lanzafame Massimiliano M   Lederman Michael M MM   Lee David M DM   Lee Jean M L JM   Lee Marah J MJ   Lee Edward T Y ET   Lemoine Janice J   Levy Jay A JA   Llibre Josep M JM   Liguori Michael A MA   Little Susan J SJ   Liu Anne Y AY   Lopez Alvaro J AJ   Loutfy Mono R MR   Loy Dawn D   Mohammed Debbie Y DY   Man Alan A   Mansour Michael K MK   Marconi Vincent C VC   Markowitz Martin M   Marques Rui R   Martin Jeffrey N JN   Martin Harold L HL   Mayer Kenneth Hugh KH   McElrath M Juliana MJ   McGhee Theresa A TA   McGovern Barbara H BH   McGowan Katherine K   McIntyre Dawn D   Mcleod Gavin X GX   Menezes Prema P   Mesa Greg G   Metroka Craig E CE   Meyer-Olson Dirk D   Miller Andy O AO   Montgomery Kate K   Mounzer Karam C KC   Nagami Ellen H EH   Nagin Iris I   Nahass Ronald G RG   Nelson Margret O MO   Nielsen Craig C   Norene David L DL   O'Connor David H DH   Ojikutu Bisola O BO   Okulicz Jason J   Oladehin Olakunle O OO   Oldfield Edward C EC   Olender Susan A SA   Ostrowski Mario M   Owen William F WF   Pae Eunice E   Parsonnet Jeffrey J   Pavlatos Andrew M AM   Perlmutter Aaron M AM   Pierce Michael N MN   Pincus Jonathan M JM   Pisani Leandro L   Price Lawrence Jay LJ   Proia Laurie L   Prokesch Richard C RC   Pujet Heather Calderon HC   Ramgopal Moti M   Rathod Almas A   Rausch Michael M   Ravishankar J J   Rhame Frank S FS   Richards Constance Shamuyarira CS   Richman Douglas D DD   Rodes Berta B   Rodriguez Milagros M   Rose Richard C RC   Rosenberg Eric S ES   Rosenthal Daniel D   Ross Polly E PE   Rubin David S DS   Rumbaugh Elease E   Saenz Luis L   Salvaggio Michelle R MR   Sanchez William C WC   Sanjana Veeraf M VM   Santiago Steven S   Schmidt Wolfgang W   Schuitemaker Hanneke H   Sestak Philip M PM   Shalit Peter P   Shay William W   Shirvani Vivian N VN   Silebi Vanessa I VI   Sizemore James M JM   Skolnik Paul R PR   Sokol-Anderson Marcia M   Sosman James M JM   Stabile Paul P   Stapleton Jack T JT   Starrett Sheree S   Stein Francine F   Stellbrink Hans-Jurgen HJ   Sterman F Lisa FL   Stone Valerie E VE   Stone David R DR   Tambussi Giuseppe G   Taplitz Randy A RA   Tedaldi Ellen M EM   Telenti Amalio A   Theisen William W   Torres Richard R   Tosiello Lorraine L   Tremblay Cecile C   Tribble Marc A MA   Trinh Phuong D PD   Tsao Alice A   Ueda Peggy P   Vaccaro Anthony A   Valadas Emilia E   Vanig Thanes J TJ   Vecino Isabel I   Vega Vilma M VM   Veikley Wenoah W   Wade Barbara H BH   Walworth Charles C   Wanidworanun Chingchai C   Ward Douglas J DJ   Warner Daniel A DA   Weber Robert D RD   Webster Duncan D   Weis Steve S   Wheeler David A DA   White David J DJ   Wilkins Ed E   Winston Alan A   Wlodaver Clifford G CG   van't Wout Angelique A   Wright David P DP   Yang Otto O OO   Yurdin David L DL   Zabukovic Brandon W BW   Zachary Kimon C KC   Zeeman Beth B   Zhao Meng M  

Science (New York, N.Y.) 20101104 6010


Infectious and inflammatory diseases have repeatedly shown strong genetic associations within the major histocompatibility complex (MHC); however, the basis for these associations remains elusive. To define host genetic effects on the outcome of a chronic viral infection, we performed genome-wide association analysis in a multiethnic cohort of HIV-1 controllers and progressors, and we analyzed the effects of individual amino acids within the classical human leukocyte antigen (HLA) proteins. We i  ...[more]

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