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Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.


ABSTRACT: We undertook a meta-analysis of six Crohn's disease genome-wide association studies (GWAS) comprising 6,333 affected individuals (cases) and 15,056 controls and followed up the top association signals in 15,694 cases, 14,026 controls and 414 parent-offspring trios. We identified 30 new susceptibility loci meeting genome-wide significance (P < 5 × 10??). A series of in silico analyses highlighted particular genes within these loci and, together with manual curation, implicated functionally interesting candidate genes including SMAD3, ERAP2, IL10, IL2RA, TYK2, FUT2, DNMT3A, DENND1B, BACH2 and TAGAP. Combined with previously confirmed loci, these results identify 71 distinct loci with genome-wide significant evidence for association with Crohn's disease.

SUBMITTER: Franke A 

PROVIDER: S-EPMC3299551 | biostudies-literature | 2010 Dec

REPOSITORIES: biostudies-literature

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Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.

Franke Andre A   McGovern Dermot P B DP   Barrett Jeffrey C JC   Wang Kai K   Radford-Smith Graham L GL   Ahmad Tariq T   Lees Charlie W CW   Balschun Tobias T   Lee James J   Roberts Rebecca R   Anderson Carl A CA   Bis Joshua C JC   Bumpstead Suzanne S   Ellinghaus David D   Festen Eleonora M EM   Georges Michel M   Green Todd T   Haritunians Talin T   Jostins Luke L   Latiano Anna A   Mathew Christopher G CG   Montgomery Grant W GW   Prescott Natalie J NJ   Raychaudhuri Soumya S   Rotter Jerome I JI   Schumm Philip P   Sharma Yashoda Y   Simms Lisa A LA   Taylor Kent D KD   Whiteman David D   Wijmenga Cisca C   Baldassano Robert N RN   Barclay Murray M   Bayless Theodore M TM   Brand Stephan S   Büning Carsten C   Cohen Albert A   Colombel Jean-Frederick JF   Cottone Mario M   Stronati Laura L   Denson Ted T   De Vos Martine M   D'Inca Renata R   Dubinsky Marla M   Edwards Cathryn C   Florin Tim T   Franchimont Denis D   Gearry Richard R   Glas Jürgen J   Van Gossum Andre A   Guthery Stephen L SL   Halfvarson Jonas J   Verspaget Hein W HW   Hugot Jean-Pierre JP   Karban Amir A   Laukens Debby D   Lawrance Ian I   Lemann Marc M   Levine Arie A   Libioulle Cecile C   Louis Edouard E   Mowat Craig C   Newman William W   Panés Julián J   Phillips Anne A   Proctor Deborah D DD   Regueiro Miguel M   Russell Richard R   Rutgeerts Paul P   Sanderson Jeremy J   Sans Miquel M   Seibold Frank F   Steinhart A Hillary AH   Stokkers Pieter C F PC   Torkvist Leif L   Kullak-Ublick Gerd G   Wilson David D   Walters Thomas T   Targan Stephan R SR   Brant Steven R SR   Rioux John D JD   D'Amato Mauro M   Weersma Rinse K RK   Kugathasan Subra S   Griffiths Anne M AM   Mansfield John C JC   Vermeire Severine S   Duerr Richard H RH   Silverberg Mark S MS   Satsangi Jack J   Schreiber Stefan S   Cho Judy H JH   Annese Vito V   Hakonarson Hakon H   Daly Mark J MJ   Parkes Miles M  

Nature genetics 20101201 12


We undertook a meta-analysis of six Crohn's disease genome-wide association studies (GWAS) comprising 6,333 affected individuals (cases) and 15,056 controls and followed up the top association signals in 15,694 cases, 14,026 controls and 414 parent-offspring trios. We identified 30 new susceptibility loci meeting genome-wide significance (P < 5 × 10⁻⁸). A series of in silico analyses highlighted particular genes within these loci and, together with manual curation, implicated functionally intere  ...[more]

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