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Identification of CTCF as a master regulator of the clustered protocadherin genes.

ABSTRACT: The brain is a large and complex network of neurons. Specific neuronal connectivity is thought to be based on the combinatorial expression of the 52 protocadherins (Pcdh) membrane adhesion proteins, whereby each neuron expresses only a specific subset. Pcdh genes are arranged in tandem, in a cluster of three families: Pcdh?, Pcdh? and Pcdh?. The expression of each Pcdh gene is regulated by a promoter that has a regulatory conserved sequence element (CSE), common to all 52 genes. The mechanism and factors controlling individual Pcdh gene expression are currently unknown. Here we show that the promoter of each Pcdh gene contains a gene-specific conserved control region, termed specific sequence element (SSE), located adjacent and upstream to the CSE and activates transcription together with the CSE. We purified the complex that specifically binds the SSE-CSE region and identified the CCTC binding-factor (CTCF) as a key molecule that binds and activates Pcdh promoters. Our findings point to CTCF as a factor essential for Pcdh expression and probably governing neuronal connectivity.

SUBMITTER: Golan-Mashiach M

PROVIDER: S-EPMC3333863 | biostudies-literature | 2012 Apr

REPOSITORIES: biostudies-literature

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Identification of CTCF as a master regulator of the clustered protocadherin genes.

Golan-Mashiach Michal M Grunspan Moshe M Emmanuel Rafi R Gibbs-Bar Liron L Dikstein Rivka R Shapiro Ehud E

Nucleic acids research 20111230 8

The brain is a large and complex network of neurons. Specific neuronal connectivity is thought to be based on the combinatorial expression of the 52 protocadherins (Pcdh) membrane adhesion proteins, whereby each neuron expresses only a specific subset. Pcdh genes are arranged in tandem, in a cluster of three families: Pcdhα, Pcdhβ and Pcdhγ. The expression of each Pcdh gene is regulated by a promoter that has a regulatory conserved sequence element (CSE), common to all 52 genes. The mechanism an ...[more]

PMID: 22210889

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Dataset Information

Identification of CTCF as a master regulator of the clustered protocadherin genes.

Publications

Identification of CTCF as a master regulator of the clustered protocadherin genes.

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