Pipit: visualizing functional impacts of structural variations.
Ontology highlight
ABSTRACT: Summary
Pipit is a gene-centric interactive visualization tool designed to study structural genomic variations. Through focusing on individual genes as the functional unit, researchers are able to study and generate hypotheses on the biological impact of different structural variations, for instance, the deletion of dosage-sensitive genes or the formation of fusion genes. Pipit is a cross-platform Java application that visualizes structural variation data from Genome Variation Format files.Availability
Executables, source code, sample data, documentation and screencast are available at https://bitbucket.org/biovizleuven/pipit.
SUBMITTER: Sakai R
PROVIDER: S-EPMC3740631 | biostudies-literature | 2013 Sep
REPOSITORIES: biostudies-literature
Publications
Pipit: visualizing functional impacts of structural variations.
Sakai Ryo R Moisse Matthieu M Reumers Joke J Aerts Jan J
Bioinformatics (Oxford, England) 20130625 17
<h4>Summary</h4>Pipit is a gene-centric interactive visualization tool designed to study structural genomic variations. Through focusing on individual genes as the functional unit, researchers are able to study and generate hypotheses on the biological impact of different structural variations, for instance, the deletion of dosage-sensitive genes or the formation of fusion genes. Pipit is a cross-platform Java application that visualizes structural variation data from Genome Variation Format fil ...[more]
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