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Template-directed chemical ligation to obtain 3'-3' and 5'-5' phosphodiester DNA linkages.


ABSTRACT: Up to now, the direct ligation of two DNA fragments with opposite directions to obtain 3'-3' or 5'-5' phosphate ester bonds is still challenging. The only way to obtain DNA oligonucleotides containing a 3'-3' or 5'-5' inversion of polarity sites is based on professional DNA chemical synthesis. Herein, we demonstrate a convenient template-directed chemical ligation that enables 3'-3' and 5'-5' linkages of two DNA oligonucleotides. This method is based on the assembly of two oligonucleotides on a template in opposite directions through forming antiparallel and parallel duplexes simultaneously, followed by coupling with N-Cyanoimidazole under mild condition. Moreover, on the basis of DNA oligonucleotides with 5'-5' linkage obtained through our template-directed chemical ligation, we developed a new cDNA display technique for in vitro selection of functional polypeptides.

SUBMITTER: Chen H 

PROVIDER: S-EPMC3975322 | biostudies-literature | 2014 Apr

REPOSITORIES: biostudies-literature

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Template-directed chemical ligation to obtain 3'-3' and 5'-5' phosphodiester DNA linkages.

Chen Haodong H   Du Feng F   Chen Gangyi G   Streckenbach Frank F   Yasmeen Afshan A   Zhao Yun Y   Tang Zhuo Z  

Scientific reports 20140404


Up to now, the direct ligation of two DNA fragments with opposite directions to obtain 3'-3' or 5'-5' phosphate ester bonds is still challenging. The only way to obtain DNA oligonucleotides containing a 3'-3' or 5'-5' inversion of polarity sites is based on professional DNA chemical synthesis. Herein, we demonstrate a convenient template-directed chemical ligation that enables 3'-3' and 5'-5' linkages of two DNA oligonucleotides. This method is based on the assembly of two oligonucleotides on a  ...[more]

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