Browse
Submit Data
Databases
API
Help

Dataset Information

34 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequences of Two Citrobacter rodentium Bacteriophages, CR8 and CR44b.

ABSTRACT: The complete genomes of two virulent phages infecting Citrobacter rodentium are reported here for the first time. Both bacteriophages were isolated from local sewage treatment plant effluents. Genome analyses revealed a close relationship between both phages and allowed their classification as members of the Autographivirinae subfamily in the T7-like genus.

SUBMITTER: Toribio AL

PROVIDER: S-EPMC4038870 | biostudies-literature | 2014 May

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequences of Two Citrobacter rodentium Bacteriophages, CR8 and CR44b.

Toribio Ana Luisa AL Pickard Derek D Cerdeño-Tárraga Ana M AM Petty Nicola K NK Thomson Nicholas N Salmond George G Dougan Gordon G

Genome announcements 20140529 3

The complete genomes of two virulent phages infecting Citrobacter rodentium are reported here for the first time. Both bacteriophages were isolated from local sewage treatment plant effluents. Genome analyses revealed a close relationship between both phages and allowed their classification as members of the Autographivirinae subfamily in the T7-like genus. ...[more]

PMID: 24874665

Similar Datasets

Complete Genome Sequence of Citrobacter rodentium Strain DBS100.

Project description:Citrobacter rodentium strain DBS100 causes an infection of the intestines in mice. It provides an important model for human gastrointestinal pathogens, such as enteropathogenic and enterohemorrhagic Escherichia coli, which cause life-threatening infections. To identify the genetic determinants that are common across the enteropathogenic bacteria, we sequenced the DBS100 genome.

| S-EPMC6588040 | biostudies-literature

Complete Genome Sequences of Two Mycobacterium smegmatis Bacteriophages.

Project description:Mycobacterium smegmatis, an acid-fast bacterial species in the phylum Actinobacteria, has often been used as a substitute for pathogenic mycobacteria in research. Here, we describe the isolation and characterization of two M. smegmatis bacteriophages, Penelope2018 and Miniwave.

| S-EPMC8407744 | biostudies-literature

Complete Genome Sequences of Two Vibrio natriegens Bacteriophages.

Project description:Vibrio natriegens, a fast-growing Gram-negative bacterium, is gaining interest as a platform for rapid biotechnology applications and metabolic engineering. Only a few bacteriophages that infect this bacterium have been identified. Here, we describe the isolation and characterization of two V. natriegens bacteriophages isolated from Hatches Creek, Wellfleet, Massachusetts.

| S-EPMC7645673 | biostudies-literature

Complete Genome Sequences of Two Bacteroides uniformis Bacteriophages.

Project description:Here, we describe the isolation and genomic annotation of two novel siphovirus species of bacteriophages that infect Bacteroides uniformis: Bacteroides phage EMB1 and Bacteroides phage EMB2. EMB1 has a 34,204-bp genome with 48 coding sequences, and EMB2 has a 34,008-bp genome with 47 coding sequences.

| S-EPMC9584325 | biostudies-literature

Complete genome sequences of two Persicivirga bacteriophages, P12024S and P12024L.

Project description:The phylum Bacteroidetes is one of the major bacterial phyla in marine environments, where bacteriophages are highly abundant. Bacteriophages infecting members of the phylum Bacteroidetes, however, have not been well represented in public genome databases. Here we announce the genome sequences of two bacteriophages, P12024S and P12024L, that were isolated from coastal seawater and lytically infect Persicivirga sp. IMCC12024, a marine Bacteroidetes bacterium.

| S-EPMC3421731 | biostudies-literature

Complete Genome Sequences of Two T4-Like Escherichia coli Bacteriophages.

Project description:Bacteriophages and their proteins have potential applications in biotechnology for the detection and control of bacterial diseases. Here, we describe the sequencing and genome annotations of two strictly virulent Escherichia coli bacteriophages that may be explored for biocontrol strategies and to expand the understanding of phage-host interactions.

| S-EPMC6025944 | biostudies-literature

Complete Genome Sequence of the Type Strain Citrobacter rodentium DSM 16636.

Project description:The type strain Citrobacter rodentium DSM 16636 was characterized in 1995. This species is widely used in rodents to study the virulence of locus-of-enterocyte-effacement-type pathogens, such as enterohemorrhagic Escherichia coli. The type strain had not been sequenced yet. Here, we report the closed genome (5.3 Gbp) and its plasmid (39.3 kbp).

| S-EPMC9119075 | biostudies-literature

Complete genome sequences of two Helicobacter pylori bacteriophages isolated from Japanese patients.

Project description:Helicobacter pylori causes peptic ulcers and gastric cancer, which lead to significantly higher morbidity in Japan than elsewhere in the world. As bacteriophage (phage) and host bacteria coevolve, the study of H. pylori phages is important to extend understanding of the evolution and pathogenesis of H. pylori. Here we report two complete genome sequences of H. pylori phages KHP30 and KHP40, which were released spontaneously from the most pathogenic East Asian-type isolates from Japanese patients.

| S-EPMC3457131 | biostudies-literature

Complete Genome Sequences of Three Bacillus anthracis Bacteriophages.

Project description:The new highly effective Bacillus anthracis phages Negev_SA, Carmel_SA, and Tavor_SA were isolated from soil samples, and their complete genomes were sequenced and analyzed. The isolated phages have potential use in future phage therapy treatment against anthrax.

| S-EPMC5754477 | biostudies-literature

Complete Genome Sequences of 38 Gordonia sp. Bacteriophages.

Project description:We report here the genome sequences of 38 newly isolated bacteriophages using Gordonia terrae 3612 (ATCC 25594) and Gordonia neofelifaecis NRRL59395 as bacterial hosts. All of the phages are double-stranded DNA (dsDNA) tail phages with siphoviral morphologies, with genome sizes ranging from 17,118 bp to 93,843 bp and spanning considerable nucleotide sequence diversity.

| S-EPMC5255912 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data