MetAMOS: a modular and open source metagenomic assembly and analysis pipeline.
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ABSTRACT:
SUBMITTER: Treangen TJ
PROVIDER: S-EPMC4053804 | biostudies-literature | 2013 Jan
REPOSITORIES: biostudies-literature
Publications
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline.
Treangen Todd J TJ Koren Sergey S Sommer Daniel D DD Liu Bo B Astrovskaya Irina I Ondov Brian B Darling Aaron E AE Phillippy Adam M AM Pop Mihai M
Genome biology 20130115 1
We describe MetAMOS, an open source and modular metagenomic assembly and analysis pipeline. MetAMOS represents an important step towards fully automated metagenomic analysis, starting with next-generation sequencing reads and producing genomic scaffolds, open-reading frames and taxonomic or functional annotations. MetAMOS can aid in reducing assembly errors, commonly encountered when assembling metagenomic samples, and improves taxonomic assignment accuracy while also reducing computational cost ...[more]
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