Ontology highlight
ABSTRACT:
SUBMITTER: Martinez X
PROVIDER: S-EPMC4876386 | biostudies-literature | 2016 May
REPOSITORIES: biostudies-literature
Martinez Xavier X Pozuelo Marta M Pascal Victoria V Campos David D Gut Ivo I Gut Marta M Azpiroz Fernando F Guarner Francisco F Manichanh Chaysavanh C
Scientific reports 20160523
To date, meta-omic approaches use high-throughput sequencing technologies, which produce a huge amount of data, thus challenging modern computers. Here we present MetaTrans, an efficient open-source pipeline to analyze the structure and functions of active microbial communities using the power of multi-threading computers. The pipeline is designed to perform two types of RNA-Seq analyses: taxonomic and gene expression. It performs quality-control assessment, rRNA removal, maps reads against func ...[more]