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Validation of a multiprotein plasma classifier to identify benign lung nodules.


ABSTRACT: INTRODUCTION:Indeterminate pulmonary nodules (IPNs) lack clinical or radiographic features of benign etiologies and often undergo invasive procedures unnecessarily, suggesting potential roles for diagnostic adjuncts using molecular biomarkers. The primary objective was to validate a multivariate classifier that identifies likely benign lung nodules by assaying plasma protein expression levels, yielding a range of probability estimates based on high negative predictive values (NPVs) for patients with 8 to 30?mm IPNs. METHODS:A retrospective, multicenter, case-control study was performed using multiple reaction monitoring mass spectrometry, a classifier comprising five diagnostic and six normalization proteins, and blinded analysis of an independent validation set of plasma samples. RESULTS:The classifier achieved validation on 141 lung nodule-associated plasma samples based on predefined statistical goals to optimize sensitivity. Using a population based nonsmall-cell lung cancer prevalence estimate of 23% for 8 to 30?mm IPNs, the classifier identified likely benign lung nodules with 90% negative predictive value and 26% positive predictive value, as shown in our prior work, at 92% sensitivity and 20% specificity, with the lower bound of the classifier's performance at 70% sensitivity and 48% specificity. Classifier scores for the overall cohort were statistically independent of patient age, tobacco use, nodule size, and chronic obstructive pulmonary disease diagnosis. The classifier also demonstrated incremental diagnostic performance in combination with a four-parameter clinical model. CONCLUSIONS:This proteomic classifier provides a range of probability estimates for the likelihood of a benign etiology that may serve as a noninvasive, diagnostic adjunct for clinical assessments of patients with IPNs.

SUBMITTER: Vachani A 

PROVIDER: S-EPMC4382127 | biostudies-literature | 2015 Apr

REPOSITORIES: biostudies-literature

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Validation of a multiprotein plasma classifier to identify benign lung nodules.

Vachani Anil A   Pass Harvey I HI   Rom William N WN   Midthun David E DE   Edell Eric S ES   Laviolette Michel M   Li Xiao-Jun XJ   Fong Pui-Yee PY   Hunsucker Stephen W SW   Hayward Clive C   Mazzone Peter J PJ   Madtes David K DK   Miller York E YE   Walker Michael G MG   Shi Jing J   Kearney Paul P   Fang Kenneth C KC   Massion Pierre P PP  

Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer 20150401 4


<h4>Introduction</h4>Indeterminate pulmonary nodules (IPNs) lack clinical or radiographic features of benign etiologies and often undergo invasive procedures unnecessarily, suggesting potential roles for diagnostic adjuncts using molecular biomarkers. The primary objective was to validate a multivariate classifier that identifies likely benign lung nodules by assaying plasma protein expression levels, yielding a range of probability estimates based on high negative predictive values (NPVs) for p  ...[more]

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