Unknown

Dataset Information

0

A draft map of the human proteome.


ABSTRACT: The availability of human genome sequence has transformed biomedical research over the past decade. However, an equivalent map for the human proteome with direct measurements of proteins and peptides does not exist yet. Here we present a draft map of the human proteome using high-resolution Fourier-transform mass spectrometry. In-depth proteomic profiling of 30 histologically normal human samples, including 17 adult tissues, 7 fetal tissues and 6 purified primary haematopoietic cells, resulted in identification of proteins encoded by 17,294 genes accounting for approximately 84% of the total annotated protein-coding genes in humans. A unique and comprehensive strategy for proteogenomic analysis enabled us to discover a number of novel protein-coding regions, which includes translated pseudogenes, non-coding RNAs and upstream open reading frames. This large human proteome catalogue (available as an interactive web-based resource at http://www.humanproteomemap.org) will complement available human genome and transcriptome data to accelerate biomedical research in health and disease.

SUBMITTER: Kim MS 

PROVIDER: S-EPMC4403737 | biostudies-literature | 2014 May

REPOSITORIES: biostudies-literature

altmetric image

Publications

A draft map of the human proteome.

Kim Min-Sik MS   Pinto Sneha M SM   Getnet Derese D   Nirujogi Raja Sekhar RS   Manda Srikanth S SS   Chaerkady Raghothama R   Madugundu Anil K AK   Kelkar Dhanashree S DS   Isserlin Ruth R   Jain Shobhit S   Thomas Joji K JK   Muthusamy Babylakshmi B   Leal-Rojas Pamela P   Kumar Praveen P   Sahasrabuddhe Nandini A NA   Balakrishnan Lavanya L   Advani Jayshree J   George Bijesh B   Renuse Santosh S   Selvan Lakshmi Dhevi N LD   Patil Arun H AH   Nanjappa Vishalakshi V   Radhakrishnan Aneesha A   Prasad Samarjeet S   Subbannayya Tejaswini T   Raju Rajesh R   Kumar Manish M   Sreenivasamurthy Sreelakshmi K SK   Marimuthu Arivusudar A   Sathe Gajanan J GJ   Chavan Sandip S   Datta Keshava K KK   Subbannayya Yashwanth Y   Sahu Apeksha A   Yelamanchi Soujanya D SD   Jayaram Savita S   Rajagopalan Pavithra P   Sharma Jyoti J   Murthy Krishna R KR   Syed Nazia N   Goel Renu R   Khan Aafaque A AA   Ahmad Sartaj S   Dey Gourav G   Mudgal Keshav K   Chatterjee Aditi A   Huang Tai-Chung TC   Zhong Jun J   Wu Xinyan X   Shaw Patrick G PG   Freed Donald D   Zahari Muhammad S MS   Mukherjee Kanchan K KK   Shankar Subramanian S   Mahadevan Anita A   Lam Henry H   Mitchell Christopher J CJ   Shankar Susarla Krishna SK   Satishchandra Parthasarathy P   Schroeder John T JT   Sirdeshmukh Ravi R   Maitra Anirban A   Leach Steven D SD   Drake Charles G CG   Halushka Marc K MK   Prasad T S Keshava TS   Hruban Ralph H RH   Kerr Candace L CL   Bader Gary D GD   Iacobuzio-Donahue Christine A CA   Gowda Harsha H   Pandey Akhilesh A  

Nature 20140501 7502


The availability of human genome sequence has transformed biomedical research over the past decade. However, an equivalent map for the human proteome with direct measurements of proteins and peptides does not exist yet. Here we present a draft map of the human proteome using high-resolution Fourier-transform mass spectrometry. In-depth proteomic profiling of 30 histologically normal human samples, including 17 adult tissues, 7 fetal tissues and 6 purified primary haematopoietic cells, resulted i  ...[more]

Similar Datasets

| S-EPMC7037972 | biostudies-literature
| S-EPMC6427241 | biostudies-literature
| S-EPMC4431823 | biostudies-literature
| S-EPMC4729960 | biostudies-literature
2023-01-28 | PXD039725 |
2014-04-24 | PXD000561 | Pride
2015-03-10 | E-PROT-1 | biostudies-arrayexpress
| S-EPMC522870 | biostudies-literature
2016-02-16 | MSV000079514 | MassIVE
| S-EPMC5872831 | biostudies-literature