Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Unimolecular Submersible Nanomachines. Synthesis, Actuation, and Monitoring.

ABSTRACT: Unimolecular submersible nanomachines (USNs) bearing light-driven motors and fluorophores are synthesized. NMR experiments demonstrate that the rotation of the motor is not quenched by the fluorophore and that the motor behaves in the same manner as the corresponding motor without attached fluorophores. No photo or thermal decomposition is observed. Through careful design of control molecules with no motor and with a slow motor, we found using single molecule fluorescence correlation spectroscopy that only the molecules with fast rotating speed (MHz range) show an enhancement in diffusion by 26% when the motor is fully activated by UV light. This suggests that the USN molecules give ?9 nm steps upon each motor actuation. A non-unidirectional rotating motor also results in a smaller, 10%, increase in diffusion. This study gives new insight into the light actuation of motorized molecules in solution.

SUBMITTER: Garcia-Lopez V

PROVIDER: S-EPMC4676417 | biostudies-literature | 2015 Dec

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Unimolecular Submersible Nanomachines. Synthesis, Actuation, and Monitoring.

García-López Víctor V Chiang Pinn-Tsong PT Chen Fang F Ruan Gedeng G Martí Angel A AA Kolomeisky Anatoly B AB Wang Gufeng G Tour James M JM

Nano letters 20151113 12

Unimolecular submersible nanomachines (USNs) bearing light-driven motors and fluorophores are synthesized. NMR experiments demonstrate that the rotation of the motor is not quenched by the fluorophore and that the motor behaves in the same manner as the corresponding motor without attached fluorophores. No photo or thermal decomposition is observed. Through careful design of control molecules with no motor and with a slow motor, we found using single molecule fluorescence correlation spectroscop ...[more]

PMID: 26540377

Similar Datasets

Synthesis and Photostability of Unimolecular Submersible Nanomachines: Toward Single-Molecule Tracking in Solution.

Project description:The synthesis and photophysical properties of a series of photostable unimolecular submersible nanomachines (USNs) are reported as a first step toward the analysis of their trajectories in solution. The USNs have a light-driven rotatory motor for propulsion in solution and photostable cy5-COT fluorophores for their tracking. These cy5-COT fluorophores are found to provide an almost 2-fold increase in photostability compared to the previous USN versions and do not affect the rotation of the motor.

| S-EPMC4877667 | biostudies-literature

Autonomous submersible multiport water sampler.

Project description:Oceanography and limnology projects often require the collection of water samples for chemical analysis. Manual water sample collection is labor-intensive and often difficult, especially in remote locations or during nighttime hours. Here we describe a compact and inexpensive autonomous submersible multiport water sampler (AutoSampler) that is largely fabricated with off-the-shelf parts making it easier to build and maintain. The system can collect up to 12 discrete samples at user controllable times or intervals and is operated using open source Arduino hardware and software that can be user modified to meet deployment requirements. While the underwater pressure housing presented here is custom built from readily available materials, there are many commercially available pressure case options that can be used as a substitute. The electronic mounting plates and battery pack are designed so that they can easily be adapted to fit into other pressure case housings. Samples can be collected into bags or syringes and sample volume is set by adjusting how long the peristaltic pump is actuated. This AutoSampler allows research that would otherwise be too labor-intensive or logistically difficult to conduct, especially in remote locations.

| S-EPMC9041238 | biostudies-literature

First-principles design of nanomachines.

Project description:Learning from nature's amazing molecular machines, globular proteins, we present a framework for the predictive design of nanomachines. We show that the crucial ingredients for a chain molecule to behave as a machine are its inherent anisotropy and the coupling between the local Frenet coordinate reference frames of nearby monomers. We demonstrate that, even in the absence of heterogeneity, protein-like behavior is obtained for a simple chain molecule made up of just 30 hard spheres. This chain spontaneously switches between 2 distinct geometries, a single helix and a dual helix, merely because of thermal fluctuations.

| S-EPMC2678487 | biostudies-literature

Hyperthermia-triggered biomimetic bubble nanomachines.

Project description:Nanoparticle-based drug delivery systems have gained much attention in the treatment of various malignant tumors during the past decades. However, limited tumor penetration of nanodrugs remains a significant hurdle for effective tumor therapy due to the existing biological barriers of tumoral microenvironment. Inspired by bubble machines, here we report the successful fabrication of biomimetic nanodevices capable of in-situ secreting cell-membrane-derived nanovesicles with smaller sizes under near infrared (NIR) laser irradiation for synergistic photothermal/photodynamic therapy. Porous Au nanocages (AuNC) are loaded with phase transitable perfluorohexane (PFO) and hemoglobin (Hb), followed by oxygen pre-saturation and indocyanine green (ICG) anchored 4T1 tumor cell membrane camouflage. Upon slight laser treatment, the loaded PFO undergoes phase transition due to surface plasmon resonance effect produced by AuNC framework, thus inducing the budding of outer cell membrane coating into small-scale nanovesicles based on the pore size of AuNC. Therefore, the hyperthermia-triggered generation of nanovesicles with smaller size, sufficient oxygen supply and anchored ICG results in enhanced tumor penetration for further self-sufficient oxygen-augmented photodynamic therapy and photothermal therapy. The as-developed biomimetic bubble nanomachines with temperature responsiveness show great promise as a potential nanoplatform for cancer treatment.

| S-EPMC10421929 | biostudies-literature

Synthesis and Magneto-Thermal Actuation of Iron Oxide Core-PNIPAM Shell Nanoparticles.

Project description:Superparamagnetic nanoparticles have been proposed for many applications in biotechnology and medicine. In this paper, it is demonstrated how the excellent colloidal stability and magnetic properties of monodisperse and individually densely grafted iron oxide nanoparticles can be used to manipulate reversibly the solubility of nanoparticles with a poly(N-isopropylacrylamide)nitrodopamine shell. "Grafting-to" and "grafting-from" methods for synthesis of an irreversibly anchored brush shell to monodisperse, oleic acid coated iron oxide cores are compared. Thereafter, it is shown that local heating by magnetic fields as well as global thermal heating can be used to efficiently and reversibly aggregate, magnetically extract nanoparticles from solution and spontaneously redisperse them. The coupling of magnetic and thermally responsive properties points to novel uses as smart materials, for example, in integrated devices for molecular separation and extraction.

| S-EPMC4559841 | biostudies-literature

Microwave synthesis and actuation of shape memory polycaprolactone foams with high speed.

Project description:Microwave technology is a highly effective approach to fast and uniform heating. This article investigates that the microwave heating as a novel method is used to rapidly foam and actuate biocompatible and biodegradable shape memory crosslinked-polycaprolactone (c-PCL) foams. The optical microscope proves that the resulting c-PCL foams have homogenous pore structure. Mechanical behavior and shape memory performance of c-PCL foams are investigated by static materials testing. Shape recovery ratio is approximately 100% and the whole recovery process takes only 98 s when trigged by microwave. Due to the unique principle of microwave heating, the recovery speed of c-PCL foams in microwave oven is several times faster than that in hot water and electric oven. Hence compared to the traditional heating methods, microwave is expected to bring more advantages to modern industry and scientific research in the field of smart materials and structures.

| S-EPMC4459203 | biostudies-other

"Biologic" level structures through chemistry: A total synthesis of a unimolecular pentavalent MUCI glycopeptide construct.

Project description:A convergent synthesis of a unimolecular pentavalent-MUC1 glycopeptide has been accomplished. A tandem repeat of unglycosylated human tumor-associated MUC1, a potential target for cancer immunotherapy, was incorporated into the known unimolecular pentavalent carbohydrate construct (5). This is an important step towards the development of a new fully synthetic anti-cancer vaccine candidate (1).

| S-EPMC3059311 | biostudies-other

Investigating the dynamics of surface-immobilized DNA nanomachines.

Project description:Surface-immobilization of molecules can have a profound influence on their structure, function and dynamics. Toehold-mediated strand displacement is often used in solution to drive synthetic nanomachines made from DNA, but the effects of surface-immobilization on the mechanism and kinetics of this reaction have not yet been fully elucidated. Here we show that the kinetics of strand displacement in surface-immobilized nanomachines are significantly different to those of the solution phase reaction, and we attribute this to the effects of intermolecular interactions within the DNA layer. We demonstrate that the dynamics of strand displacement can be manipulated by changing strand length, concentration and G/C content. By inserting mismatched bases it is also possible to tune the rates of the constituent displacement processes (toehold-binding and branch migration) independently, and information can be encoded in the time-dependence of the overall reaction. Our findings will facilitate the rational design of surface-immobilized dynamic DNA nanomachines, including computing devices and track-based motors.

| S-EPMC4937388 | biostudies-literature

Bacterial nanomachines: the flagellum and type III injectisome.

Project description:The bacterial flagellum and the virulence-associated injectisome are complex, structurally related nanomachines that bacteria use for locomotion or the translocation of virulence factors into eukaryotic host cells. The assembly of both structures and the transfer of extracellular proteins is mediated by a unique, multicomponent transport apparatus, the type III secretion system. Here, we discuss the significant progress that has been made in recent years in the visualization and functional characterization of many components of the type III secretion system, the structure of the bacterial flagellum, and the injectisome complex.

| S-EPMC2964186 | biostudies-literature

Human guanylate binding proteins: nanomachines orchestrating host defense.

Project description:Disease-causing microorganisms not only breach anatomical barriers and invade tissues but also frequently enter host cells, nutrient-enriched environments amenable to support parasitic microbial growth. Protection from many infectious diseases is therefore reliant on the ability of individual host cells to combat intracellular infections through the execution of cell-autonomous defense programs. Central players in human cell-autonomous immunity are members of the family of dynamin-related guanylate binding proteins (GBPs). The importance of these interferon-inducible GTPases in host defense to viral, bacterial, and protozoan pathogens has been established for some time; only recently, cell biological and biochemical studies that largely focused on the prenylated paralogs GBP1, GBP2, and GBP5 have provided us with robust molecular frameworks for GBP-mediated immunity. Specifically, the recent characterization of GBP1 as a bona fide pattern recognition receptor for bacterial lipopolysaccharide (LPS) disrupting the integrity of bacterial outer membranes through LPS aggregation, the discovery of a link between hydrolysis-induced GMP production by GBP1 and inflammasome activation, and the classification of GBP2 and GBP5 as inhibitors of viral envelope glycoprotein processing via suppression of the host endoprotease furin have paved the way for a vastly improved conceptual understanding of the molecular mechanisms by which GBP nanomachines execute cell-autonomous immunity. The herein discussed models incorporate our current knowledge of the antimicrobial, proinflammatory, and biochemical properties of human GBPs and thereby provide testable hypotheses that will guide future studies into the intricacies of GBP-controlled host defense and their role in human disease.

| S-EPMC8196077 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data