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Complete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing.

ABSTRACT: The cyanobacterial genus Microcystis is well known as the main group that forms harmful blooms in water. A strain of Microcystis, M. panniformis FACHB1757, was isolated from Meiliang Bay of Lake Taihu in August 2011. The whole genome was sequenced using PacBio RS II sequencer with 48-fold coverage. The complete genome sequence with no gaps contained a 5,686,839 bp chromosome and a 38,683 bp plasmid, which coded for 6,519 and 49 proteins, respectively. Comparison with strains of M. aeruginosa and some other water bloom-forming cyanobacterial species revealed large-scale structure rearrangement and length variation at the genome level along with 36 genomic islands annotated genome-wide, which demonstrates high plasticity of the M. panniformis FACHB1757 genome and reveals that Microcystis has a flexible genome evolution.

SUBMITTER: Zhang JY

PROVIDER: S-EPMC4730716 | biostudies-literature | 2016

REPOSITORIES: biostudies-literature

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Complete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing.

Zhang Jun-Yi JY Guan Rui R Zhang Hu-Jun HJ Li Hua H Xiao Peng P Yu Gong-Liang GL Du Lei L Cao De-Min DM Zhu Bing-Chuan BC Li Ren-Hui RH Lu Zu-Hong ZH

Standards in genomic sciences 20160128

The cyanobacterial genus Microcystis is well known as the main group that forms harmful blooms in water. A strain of Microcystis, M. panniformis FACHB1757, was isolated from Meiliang Bay of Lake Taihu in August 2011. The whole genome was sequenced using PacBio RS II sequencer with 48-fold coverage. The complete genome sequence with no gaps contained a 5,686,839 bp chromosome and a 38,683 bp plasmid, which coded for 6,519 and 49 proteins, respectively. Comparison with strains of M. aeruginosa and ...[more]

PMID: 26823957

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