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Comprehensive data analysis of human ureter proteome.

ABSTRACT: Comprehensive human ureter proteome dataset was generated from OFFGel fractionated ureter samples. Our result showed that among 2217 non-redundant ureter proteins, 751 protein candidates (33.8%) were detected in urine as urinary protein/polypeptide or exosomal protein. On the other hand, comparing ureter protein hits (48) that are not shown in corresponding databases to urinary bladder and prostate human protein atlas databases pinpointed 21 proteins that might be unique to ureter tissue. In conclusion, this finding offers future perspectives for possible identification of ureter disease-associated biomarkers such as ureter carcinoma. In addition, Cytoscape GO annotation was examined on the final ureter dataset to better understand proteins molecular function, biological processes, and cellular component. The ureter proteomic dataset published in this article will provide a valuable resource for researchers working in the field of urology and urine biomarker discovery.

SUBMITTER: Magdeldin S

PROVIDER: S-EPMC4749945 | biostudies-literature | 2016 Mar

REPOSITORIES: biostudies-literature

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Comprehensive data analysis of human ureter proteome.

Magdeldin Sameh S Hirao Yoshitoshi Y El Guoshy Amr A Xu Bo B Zhang Ying Y Fujinaka Hidehiko H Yamamoto Keiko K Yates John R JR Yamamoto Tadashi T

Data in brief 20160203

Comprehensive human ureter proteome dataset was generated from OFFGel fractionated ureter samples. Our result showed that among 2217 non-redundant ureter proteins, 751 protein candidates (33.8%) were detected in urine as urinary protein/polypeptide or exosomal protein. On the other hand, comparing ureter protein hits (48) that are not shown in corresponding databases to urinary bladder and prostate human protein atlas databases pinpointed 21 proteins that might be unique to ureter tissue. In con ...[more]

PMID: 26937461

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