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Design and computational analysis of single-cell RNA-sequencing experiments.


ABSTRACT: Single-cell RNA-sequencing (scRNA-seq) has emerged as a revolutionary tool that allows us to address scientific questions that eluded examination just a few years ago. With the advantages of scRNA-seq come computational challenges that are just beginning to be addressed. In this article, we highlight the computational methods available for the design and analysis of scRNA-seq experiments, their advantages and disadvantages in various settings, the open questions for which novel methods are needed, and expected future developments in this exciting area.

SUBMITTER: Bacher R 

PROVIDER: S-EPMC4823857 | biostudies-literature | 2016 Apr

REPOSITORIES: biostudies-literature

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Design and computational analysis of single-cell RNA-sequencing experiments.

Bacher Rhonda R   Kendziorski Christina C  

Genome biology 20160407


Single-cell RNA-sequencing (scRNA-seq) has emerged as a revolutionary tool that allows us to address scientific questions that eluded examination just a few years ago. With the advantages of scRNA-seq come computational challenges that are just beginning to be addressed. In this article, we highlight the computational methods available for the design and analysis of scRNA-seq experiments, their advantages and disadvantages in various settings, the open questions for which novel methods are neede  ...[more]

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