Browse
Submit Data
Databases
API
Help

Dataset Information

24 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequence of Vaccinia Virus Strain L-IVP.

ABSTRACT: Most of the live vaccine doses of vaccinia virus donated to the Intensified Smallpox Eradication Programme after 1971 were prepared using the L-IVP strain. A mixture of three clones of the L-IVP strain was sequenced using MySEQ. Consensus sequence similarity with the vaccinia virus Lister strain is 99.5%.

SUBMITTER: Shvalov AN

PROVIDER: S-EPMC4866859 | biostudies-literature | 2016 May

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequence of Vaccinia Virus Strain L-IVP.

Shvalov Alexander N AN Sivolobova Galina F GF Kuligina Elena V EV Kochneva Galina V GV

Genome announcements 20160512 3

Most of the live vaccine doses of vaccinia virus donated to the Intensified Smallpox Eradication Programme after 1971 were prepared using the L-IVP strain. A mixture of three clones of the L-IVP strain was sequenced using MySEQ. Consensus sequence similarity with the vaccinia virus Lister strain is 99.5%. ...[more]

PMID: 27174282

Similar Datasets

Complete Genome Sequence of Seoul Virus Strain Tchoupitoulas.

Project description:Seoul virus (genus Hantavirus; family Bunyaviridae) is an emerging pathogen associated with cases of acute kidney injury in several countries across the globe. We report here the whole-genome sequence of the Tchoupitoulas strain of Seoul virus isolated in New Orleans, LA.

| S-EPMC4901218 | biostudies-literature

Vaccinia virus, strain WR complete genome

Project description:Vaccinia virus, strain WR complete genome assembly and transcription profiling study, using third-generation RNA-sequencing

| PRJEB23324 | ENA

Complete Genome Sequence of Porcine Encephalomyocarditis Virus Strain BD2.

Project description:Encephalomyocarditis virus (EMCV) causes acute myocarditis in young pigs or reproductive failure in sows, and it is divided into two main groups. Here, we report the complete genome sequence of EMCV strain BD2, which belongs to group I.

| S-EPMC3861423 | biostudies-literature

Complete Genome Sequence of the Embu Virus Strain SPAn880.

Project description:We report the complete genome sequence of the Embu virus. The genome consists of 185,139 bp and is nearly identical to that of the Cotia virus. This is the first report on the Embu virus genome sequence, which has been considered an unclassified poxvirus until now.

| S-EPMC4256181 | biostudies-literature

Complete Genome Sequence of Herpes Simplex Virus 1 Strain McKrae.

Project description:Herpes simplex virus 1 (HSV-1) strain McKrae is highly virulent and relatively neuroinvasive in animal models compared with other wild-type HSV-1 strains. To identify the genetic determinants that lead to the unique phenotypes of the McKrae strain, we sequenced its genome with PacBio single-molecule real-time (SMRT) technology and resolved the complete sequence.

| S-EPMC6763650 | biostudies-literature

Complete Genome Sequence of Herpes Simplex Virus 1 Strain MacIntyre.

Project description:Herpes simplex virus type 1 (HSV-1) strain MacIntyre has a severe defect in the anterograde spread after replication in the nucleus. To better understand and identify the genetic determinants that lead to the unique phenotypes of the MacIntyre strain, we sequenced its genome with PacBio single-molecule real-time sequencing technology and resolved the complete sequence.

| S-EPMC6742799 | biostudies-literature

Complete Genome Sequence of the Oncolytic Sendai virus Strain Moscow.

Project description:We report here the complete genome sequence of Sendai virus Moscow strain. Anecdotal evidence for the efficacy of oncolytic virotherapy exists for this strain. The RNA genome of the Moscow strain is 15,384 nucleotides in length and differs from the nearest strain, BB1, by 18 nucleotides and 11 amino acids.

| S-EPMC4982289 | biostudies-literature

Complete Genome Sequence of Herpes Simplex Virus 2 Strain 333.

Project description:Herpes simplex virus 2, or human herpesvirus 2, is a ubiquitous human pathogen that causes genital ulcerations and establishes latency in sacral root ganglia. We fully sequenced and manually curated the viral genome sequence of herpes simplex virus 2, strain 333 using Pacific Biosciences and Illumina sequencing technologies.

| S-EPMC6256523 | biostudies-literature

Complete Genome Sequence of Rift Valley Fever Virus Strain Lunyo.

Project description:Using next-generation sequencing technologies, the first complete genome sequence of Rift Valley fever virus strain Lunyo is reported here. Originally reported as an attenuated antigenic variant strain from Uganda, genomic sequence analysis shows that Lunyo clusters together with other Ugandan isolates.

| S-EPMC4832149 | biostudies-literature

Complete genome sequence of a virulent porcine epidemic diarrhea virus strain.

Project description:In recent years, acute outbreaks of epizootic diarrhea have occurred on many swine farms in China. Although the putative causative virus of the disease was not isolated, the genomic sequence of porcine epidemic diarrhea virus (PEDV) was consistently detected from feces of diseased pigs by reverse transcription-PCR (RT-PCR). Here we report a complete genome sequence of PEDV which is apparently different from those of early PEDV circulated in Chinese swine herds.

| S-EPMC3503061 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data