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Single DNA molecule jamming and history-dependent dynamics during motor-driven viral packaging.


ABSTRACT: In many viruses molecular motors forcibly pack single DNA molecules to near-crystalline density into ~50-100 nm prohead shells1, 2. Unexpectedly, we found that packaging frequently stalls in conditions that induce net attractive DNA-DNA interactions3. Here, we present findings suggesting that this stalling occurs because the DNA undergoes a nonequilibrium jamming transition analogous to that observed in many soft-matter systems, such as colloidal and granular systems4-8. Experiments in which conditions are changed during packaging to switch DNA-DNA interactions between purely repulsive and net attractive reveal strongly history-dependent dynamics. An abrupt deceleration is usually observed before stalling, indicating that a transition in DNA conformation causes an abrupt increase in resistance. Our findings suggest that the concept of jamming can be extended to a single polymer molecule. However, compared with macroscopic samples of colloidal particles5 we find that single DNA molecules jam over a much larger range of densities. We attribute this difference to the nanoscale system size, consistent with theoretical predictions for jamming of attractive athermal particles.9, 10.

SUBMITTER: Keller N 

PROVIDER: S-EPMC4982518 | biostudies-literature | 2016 Aug

REPOSITORIES: biostudies-literature

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Single DNA molecule jamming and history-dependent dynamics during motor-driven viral packaging.

Keller Nicholas N   Grimes Shelley S   Jardine Paul J PJ   Smith Douglas E DE  

Nature physics 20160502 8


In many viruses molecular motors forcibly pack single DNA molecules to near-crystalline density into ~50-100 nm prohead shells<sup>1, 2</sup>. Unexpectedly, we found that packaging frequently stalls in conditions that induce net attractive DNA-DNA interactions<sup>3</sup>. Here, we present findings suggesting that this stalling occurs because the DNA undergoes a nonequilibrium jamming transition analogous to that observed in many soft-matter systems, such as colloidal and granular systems<sup>4-  ...[more]

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