Dataset Information

Single Drop Electroanalysis and Interfacial Interactions: Sensitivity versus Limit of Detection†.

ABSTRACT: We report single drop electroanalytical measurements of pharmaceutically and biologically relevant compounds using screen printed electrodes (SPEs) modified with carboxylated multiwalled carbon nanotubes (MWCNT-COOH) as the sensor surface. Acetaminophen, nicotine, ascorbic acid, and nicotinamide adenine dinucleotide reduced form (NADH) were detected in a single drop of solution. We show that combined polar and nonpolar interactions of analytes with -COOH functional groups and large surface area of MWCNT, respectively, allow highly sensitive analyte detection with wide dynamic range. Smaller analytes can bind to a significantly greater number of sensor sites than the bulkier analytes and offer better detection sensitivity. Results suggest that sensitivity is controlled by predominant nonpolar interactions that an analyte can undergo with the MWCNT-COOH SPE sensor surface, whereas limit of detection is controlled by the extent of polar interactions between an analyte and the sensor surface, facilitating interfacial charge transport and an electrochemical signal output. Furthermore, a combination of polar and nonpolar analyte interactions with the sensor surface shows a synergistic effect on sensitivity and detection limit. This could be a likely reason for why sensitivity does not need to always correlate with lower detection limits as variations in the interfacial interactions are critical. Application of the designed single drop method to real samples was validated by estimating the amounts of acetaminophen, nicotine, ascorbic acid, and NADH in commercially available pharmaceuticals with excellent recovery.

SUBMITTER: Walgama C

PROVIDER: S-EPMC5175583 | biostudies-literature | 2016 Nov

REPOSITORIES: biostudies-literature

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Single Drop Electroanalysis and Interfacial Interactions: Sensitivity versus Limit of Detection<sup>†</sup>.

Walgama Charuksha C Gallman Matthew M Krishnan Sadagopan S

Electroanalysis 20160719 11

We report single drop electroanalytical measurements of pharmaceutically and biologically relevant compounds using screen printed electrodes (SPEs) modified with carboxylated multiwalled carbon nanotubes (MWCNT-COOH) as the sensor surface. Acetaminophen, nicotine, ascorbic acid, and nicotinamide adenine dinucleotide reduced form (NADH) were detected in a single drop of solution. We show that combined polar and nonpolar interactions of analytes with -COOH functional groups and large surface area ...[more]

PMID: 28018117

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Project description:BackgroundThe targeted capture and sequencing of genomic regions has rapidly demonstrated its utility in genetic studies. Inherent in this technology is considerable heterogeneity of target coverage and this is expected to systematically impact our sensitivity to detect genuine polymorphisms. To fully interpret the polymorphisms identified in a genetic study it is often essential to both detect polymorphisms and to understand where and with what probability real polymorphisms may have been missed.ResultsUsing down-sampling of 30 deeply sequenced exomes and a set of gold-standard single nucleotide variant (SNV) genotype calls for each sample, we developed an empirical model relating the read depth at a polymorphic site to the probability of calling the correct genotype at that site. We find that measured sensitivity in SNV detection is substantially worse than that predicted from the naive expectation of sampling from a binomial. This calibrated model allows us to produce single nucleotide resolution SNV sensitivity estimates which can be merged to give summary sensitivity measures for any arbitrary partition of the target sequences (nucleotide, exon, gene, pathway, exome). These metrics are directly comparable between platforms and can be combined between samples to give "power estimates" for an entire study. We estimate a local read depth of 13X is required to detect the alleles and genotype of a heterozygous SNV 95% of the time, but only 3X for a homozygous SNV. At a mean on-target read depth of 20X, commonly used for rare disease exome sequencing studies, we predict 5-15% of heterozygous and 1-4% of homozygous SNVs in the targeted regions will be missed.ConclusionsNon-reference alleles in the heterozygote state have a high chance of being missed when commonly applied read coverage thresholds are used despite the widely held assumption that there is good polymorphism detection at these coverage levels. Such alleles are likely to be of functional importance in population based studies of rare diseases, somatic mutations in cancer and explaining the "missing heritability" of quantitative traits.

Dataset Information

Single Drop Electroanalysis and Interfacial Interactions: Sensitivity versus Limit of Detection†.

Publications

Single Drop Electroanalysis and Interfacial Interactions: Sensitivity versus Limit of Detection<sup>†</sup>.

Similar Datasets

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