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Online interactive analysis of protein structure ensembles with Bio3D-web.

ABSTRACT: Bio3D-web is an online application for analyzing the sequence, structure and conformational heterogeneity of protein families. Major functionality is provided for identifying protein structure sets for analysis, their alignment and refined structure superposition, sequence and structure conservation analysis, mapping and clustering of conformations and the quantitative comparison of their predicted structural dynamics.Bio3D-web is based on the Bio3D and Shiny R packages. All major browsers are supported and full source code is available under a GPL2 license from http://thegrantlab.org/bio3d-web CONTACT: bjgrant@umich.edu or lars.skjarven@uib.no.

SUBMITTER: Skjærven L 

PROVIDER: S-EPMC5181562 | biostudies-literature | 2016 Nov

REPOSITORIES: biostudies-literature

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Online interactive analysis of protein structure ensembles with Bio3D-web.

Skjærven Lars L   Jariwala Shashank S   Yao Xin-Qiu XQ   Grant Barry J BJ  

Bioinformatics (Oxford, England) 20160716 22

Bio3D-web is an online application for analyzing the sequence, structure and conformational heterogeneity of protein families. Major functionality is provided for identifying protein structure sets for analysis, their alignment and refined structure superposition, sequence and structure conservation analysis, mapping and clustering of conformations and the quantitative comparison of their predicted structural dynamics.<h4>Availability</h4>Bio3D-web is based on the Bio3D and Shiny R packages. All  ...[more]