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Post-crystallization Improvement of RNA Crystal Diffraction Quality.

ABSTRACT: The crystallization and structural determination of large RNAs and their complexes remain major bottlenecks in the mechanistic analysis of cellular and viral RNAs. Here, we describe a protocol that combines post-crystallization dehydration and ion replacement that dramatically improved the diffraction quality of crystals of a large gene-regulatory tRNA-mRNA complex. Through this method, the resolution limit of X-ray data extended from 8.5 to 3.2 Å, enabling structure determination. Although this protocol was developed for a particular RNA complex, the general importance of solvent and counterions in nucleic acid structure may render it generally useful for crystallographic analysis of other RNAs.

SUBMITTER: Zhang J

PROVIDER: S-EPMC5184826 | biostudies-literature | 2015

REPOSITORIES: biostudies-literature

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Post-crystallization Improvement of RNA Crystal Diffraction Quality.

Zhang Jinwei J Ferré-D'Amaré Adrian R AR

Methods in molecular biology (Clifton, N.J.) 20150101

The crystallization and structural determination of large RNAs and their complexes remain major bottlenecks in the mechanistic analysis of cellular and viral RNAs. Here, we describe a protocol that combines post-crystallization dehydration and ion replacement that dramatically improved the diffraction quality of crystals of a large gene-regulatory tRNA-mRNA complex. Through this method, the resolution limit of X-ray data extended from 8.5 to 3.2 Å, enabling structure determination. Although this ...[more]

PMID: 25967049

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