Ontology highlight
ABSTRACT:
SUBMITTER: Li G
PROVIDER: S-EPMC5224499 | biostudies-literature | 2017 Jan
REPOSITORIES: biostudies-literature
Li Guipeng G Chen Yang Y Snyder Michael P MP Zhang Michael Q MQ
Nucleic acids research 20160912 1
ChIA-PET2 is a versatile and flexible pipeline for analyzing different types of ChIA-PET data from raw sequencing reads to chromatin loops. ChIA-PET2 integrates all steps required for ChIA-PET data analysis, including linker trimming, read alignment, duplicate removal, peak calling and chromatin loop calling. It supports different kinds of ChIA-PET data generated from different ChIA-PET protocols and also provides quality controls for different steps of ChIA-PET analysis. In addition, ChIA-PET2 ...[more]