Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome Sequence of Southern tomato virus in Asymptomatic Tomato 'Sweet Hearts'.

ABSTRACT: The genome sequence of Southern tomato virus in asymptomatic Solanum lycopersicum 'Sweet Hearts' (STV-Florida) in Florida was assembled from small RNAs sequenced by Illumina RNA-seq. The STV-Florida genome shared 99.0 to 99.9% similarity with full genome sequences from Bangladesh, China, Mexico, and the United States (Mississippi and North Carolina).

SUBMITTER: Alcala-Briseno RI

PROVIDER: S-EPMC5313602 | biostudies-literature | 2017 Feb

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Genome Sequence of Southern tomato virus in Asymptomatic Tomato 'Sweet Hearts'.

Alcalá-Briseño Ricardo I RI Coşkan Sevgi S Londoño Maria A MA Polston Jane E JE

Genome announcements 20170216 7

The genome sequence of Southern tomato virus in asymptomatic Solanum lycopersicum 'Sweet Hearts' (STV-Florida) in Florida was assembled from small RNAs sequenced by Illumina RNA-seq. The STV-Florida genome shared 99.0 to 99.9% similarity with full genome sequences from Bangladesh, China, Mexico, and the United States (Mississippi and North Carolina). ...[more]

PMID: 28209810

Similar Datasets

Effect on tomato plants of asymptomatic infection with southern tomato virus

Project description:Southern tomato virus (STV) often infects healthy tomato plants (Solanum lycopersicum). In this study, we compared STV-free and STV-infected cultivar M82 plants to determine the effect of STV infection on the host plant. STV-free plants exhibited a short and bushy phenotype, whereas STV-infected plants exhibited increased height. STV-infected plants produced more fruit than STV-free plants, and the germination rate of seeds from STV-infected plants was higher than that of seeds from STV-free plants. This phenotypic difference was also observed in progeny plants (siblings) derived from a single STV-infected plant in which the transmission rate of STV to progeny plants via the seeds was approximately 86%. These results suggest that the interaction between STV and host plants is mutualistic. Transcriptome analyses revealed that STV infection affected gene expressions in host plants, notably evidenced by down-regulation of genes involved in ethylene biosynthesis and signaling. STV-infected tomato plants thus might be artificially selected due to their superior traits as a crop.

2019-09-13 | GSE137303 | GEO

Complete Genome Sequence of Southern tomato virus Naturally Infecting Tomatoes in Bangladesh.

Project description:The complete genome sequence of a Southern tomato virus (STV) isolate on tomato plants in a seed production field in Bangladesh was obtained for the first time using next-generation sequencing. The identified isolate, STV_BD-13, shares a high degree of sequence identity (99%) with several known STV isolates worldwide.

| S-EPMC4698391 | biostudies-literature

Complete Genome Sequence of Southern tomato virus Identified in China Using Next-Generation Sequencing.

Project description:The complete genome sequence of Southern tomato virus (STV), a double-stranded RNA virus that affects tomato in China, was determined using small RNA deep sequencing. This Chinese isolate shares 99% sequence identity to other isolates from Mexico, France, Spain, and the United States. This is the first report of STV infecting tomatoes in Asia.

| S-EPMC4616180 | biostudies-literature

Effect on tomato plants of asymptomatic infection with southern tomato virus

Project description:Effect on tomato plants of asymptomatic infection with southern tomato virus

| PRJNA565137 | ENA

Genome Sequence of a Tomato-Infecting Tomato Mosaic Virus Isolate from Zimbabwe.

Project description:A tomato-infecting tomato mosaic virus (ToMV) isolate was detected in Zimbabwe using lateral flow kits and double-antibody sandwich enzyme-linked immunosorbent assay. Next-generation sequencing and de novo assembly were subsequently performed to determine its genome sequence. The ToMV genome of the Zimbabwe isolate is the second to be reported in Africa.

| S-EPMC5854769 | biostudies-literature

Complete Genome Sequence of a Tomato-Infecting Tomato Mottle Mosaic Virus in New York.

Project description:The complete genome sequence of an isolate of tomato mottle mosaic virus (ToMMV) infecting tomatoes in New York was obtained using small RNA (sRNA) deep sequencing. ToMMV_NY-13 shared 99% sequence identity with isolates from Mexico and Florida. Broader distribution of this emerging virus is a cause for concern to the tomato industry.

| S-EPMC4691660 | biostudies-literature

Complete genome sequence of a tobacco-infecting, tomato-blistering mosaic virus.

Project description:The complete genome sequence of a new tomato-blistering mosaic virus (ToBMV) isolate was determined. This tymovirus isolate was first described infecting tobacco during the 1980s, but it also infects other Solanaceae members experimentally. The genome has 6,257 nucleotides and shares 88% nucleotide identity with the ToBMV isolated from tomato.

| S-EPMC4125764 | biostudies-literature

Complete Genome Sequence of a Tomato Isolate of Parietaria Mottle Virus from Italy.

Project description:We report here the complete genome sequence of isolate T32 of parietaria mottle virus (PMoV) infecting tomato plants in Turin, Italy, obtained by Sanger sequencing. T32 shares 90.48 to 96.69% nucleotide identity with other two PoMV isolates, CR8 and Pe1, respectively, whose complete genome sequences are available.

| S-EPMC4683225 | biostudies-literature

Coding-complete genome sequence of an isolate of papaya virus E in tomato.

Project description:An isolate of papaya virus E was identified in tomato fruits from Mexico. The coding-complete genome sequence was determined using high-throughput sequencing. The coding-complete genome is 13,412 nucleotides and contains 8 open reading frames.

| S-EPMC10508159 | biostudies-literature

Complete Genome Sequence of a Little Cherry Virus-2 Isolate from Sweet Cherry in China.

Project description:The first complete genome sequence of a little cherry virus-2 (LChV-2-TA) isolate from China was determined using small RNA deep sequencing combined with overlapping reverse transcriptase PCR (RT-PCR). Phylogenetic analysis revealed that LChV-2-TA grouped in a well-supported cluster with members of the genus Ampelovirus with close relationships to previously reported LChV-2 isolates.

| S-EPMC6742791 | biostudies-literature