Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequence of Southern tomato virus Naturally Infecting Tomatoes in Bangladesh.

ABSTRACT: The complete genome sequence of a Southern tomato virus (STV) isolate on tomato plants in a seed production field in Bangladesh was obtained for the first time using next-generation sequencing. The identified isolate, STV_BD-13, shares a high degree of sequence identity (99%) with several known STV isolates worldwide.

SUBMITTER: Padmanabhan C

PROVIDER: S-EPMC4698391 | biostudies-literature | 2015 Dec

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequence of Southern tomato virus Naturally Infecting Tomatoes in Bangladesh.

Padmanabhan Chellappan C Zheng Yi Y Li Rugang R Fei Zhangjun Z Ling Kai-Shu KS

Genome announcements 20151231 6

The complete genome sequence of a Southern tomato virus (STV) isolate on tomato plants in a seed production field in Bangladesh was obtained for the first time using next-generation sequencing. The identified isolate, STV_BD-13, shares a high degree of sequence identity (99%) with several known STV isolates worldwide. ...[more]

PMID: 26722014

Similar Datasets

Complete genome sequence of a new tobamovirus naturally infecting tomatoes in Mexico.

Project description:The complete genomic sequence of a new tobamovirus in tomatoes was determined through deep sequencing and assembly of small RNAs, then validated through Sanger sequencing. Based on the low sequence identity (?85%) to known viruses and a close phylogenetic relationship to tobamoviruses, it was identified as a new species.

| S-EPMC3790092 | biostudies-literature

Complete genome sequence of a tobacco-infecting, tomato-blistering mosaic virus.

Project description:The complete genome sequence of a new tomato-blistering mosaic virus (ToBMV) isolate was determined. This tymovirus isolate was first described infecting tobacco during the 1980s, but it also infects other Solanaceae members experimentally. The genome has 6,257 nucleotides and shares 88% nucleotide identity with the ToBMV isolated from tomato.

| S-EPMC4125764 | biostudies-literature

Complete Genome Sequence of a Tomato-Infecting Tomato Mottle Mosaic Virus in New York.

Project description:The complete genome sequence of an isolate of tomato mottle mosaic virus (ToMMV) infecting tomatoes in New York was obtained using small RNA (sRNA) deep sequencing. ToMMV_NY-13 shared 99% sequence identity with isolates from Mexico and Florida. Broader distribution of this emerging virus is a cause for concern to the tomato industry.

| S-EPMC4691660 | biostudies-literature

Genome Sequence of a Tomato-Infecting Tomato Mosaic Virus Isolate from Zimbabwe.

Project description:A tomato-infecting tomato mosaic virus (ToMV) isolate was detected in Zimbabwe using lateral flow kits and double-antibody sandwich enzyme-linked immunosorbent assay. Next-generation sequencing and de novo assembly were subsequently performed to determine its genome sequence. The ToMV genome of the Zimbabwe isolate is the second to be reported in Africa.

| S-EPMC5854769 | biostudies-literature

Complete Genome Sequence of Southern tomato virus Identified in China Using Next-Generation Sequencing.

Project description:The complete genome sequence of Southern tomato virus (STV), a double-stranded RNA virus that affects tomato in China, was determined using small RNA deep sequencing. This Chinese isolate shares 99% sequence identity to other isolates from Mexico, France, Spain, and the United States. This is the first report of STV infecting tomatoes in Asia.

| S-EPMC4616180 | biostudies-literature

Genome Sequence of Southern tomato virus in Asymptomatic Tomato 'Sweet Hearts'.

Project description:The genome sequence of Southern tomato virus in asymptomatic Solanum lycopersicum 'Sweet Hearts' (STV-Florida) in Florida was assembled from small RNAs sequenced by Illumina RNA-seq. The STV-Florida genome shared 99.0 to 99.9% similarity with full genome sequences from Bangladesh, China, Mexico, and the United States (Mississippi and North Carolina).

| S-EPMC5313602 | biostudies-literature

Complete genome sequence of a carnation mottle virus infecting hop plants.

Project description:The Carnation mottle virus (CarMV) is a single positive-strand RNA virus belonging to the genus Carmovirus. The major natural host for CarMV is the carnation. In this study, using transcriptome data, we provide for the first time a nearly complete genome sequence of CarMV infecting hop plants.

| S-EPMC4432326 | biostudies-literature

Complete genome sequence of a hop latent virus infecting hop plants.

Project description:The hop latent virus is a single-stranded RNA virus that mainly infects hop plants. Here, we report the complete genome sequence of a hop latent virus, which was de novo assembled by RNA sequencing (RNA-seq). Our study indicates that transcriptome data are useful for identifying a complete viral genome.

| S-EPMC4408328 | biostudies-literature

First Complete Genome Sequence of an Isolate of Tomato Mottle Mosaic Virus Infecting Plants of Solanum lycopersicum in South America.

Project description:The complete nucleotide sequence of an isolate of tomato mottle mosaic virus (ToMMV) was determined. The virus, originally isolated from symptomatic tomato plants found in a county near the city of São Paulo, Brazil, has a genome with 99% nucleotide sequence identity with ToMMV from Mexico, China, Spain, and the United States.

| S-EPMC5946046 | biostudies-literature

Complete genome sequence of Le Blanc virus, a third Caenorhabditis nematode-infecting virus.

Project description:Orsay virus and Santeuil virus, the first known viruses capable of naturally infecting the nematodes Caenorhabditis elegans and Caenorhabditis briggsae, respectively, were recently identified by high-throughput sequencing of wild Caenorhabditis strains. By similar analysis of another wild C. briggsae isolate, we have now discovered and sequenced the complete genome of a third novel virus, Le Blanc virus, that is distantly related to Orsay and Santeuil viruses. All three viruses are positive-sense RNA viruses with bipartite genomes that are most closely related to nodaviruses. Identification of a third virus capable of infecting Caenorhabditis nematodes enables comparative analysis of this clade of viruses and strengthens this model for investigating virus-host interactions.

| S-EPMC3486331 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data