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SNP-SNP interactions between WNT4 and WNT5A were associated with obesity related traits in Han Chinese Population.


ABSTRACT: Considering the biological roles of WNT4 and WNT5A involved in adipogenesis, we aimed to investigate whether SNPs in WNT4 and WNT5A contribute to obesity related traits in Han Chinese population. Targeted genomic sequence for WNT4 and WNT5A was determined in 100 Han Chinese subjects and tag SNPs were selected. Both single SNP and SNP?×?SNP interaction association analyses with body mass index (BMI) were evaluated in the 100 subjects and another independent sample of 1,627 Han Chinese subjects. Meta-analyses were performed and multiple testing corrections were carried out using the Bonferroni method. Consistent with the Genetic Investigation of ANthropometric Traits (GIANT) dataset results, we didn't detect significant association signals in single SNP association analyses. However, the interaction between rs2072920 and rs11918967, was associated with BMI after multiple testing corrections (combined P?=?2.20?×?10-4). The signal was also significant in each contributing data set. SNP rs2072920 is located in the 3'-UTR of WNT4 and SNP rs11918967 is located in the intron of WNT5A. Functional annotation results revealed that both SNPs might be involved in transcriptional regulation of gene expression. Our results suggest that a combined effect of SNPs via WNT4-WNT5A interaction may affect the variation of BMI in Han Chinese population.

SUBMITTER: Dong SS 

PROVIDER: S-EPMC5341019 | biostudies-literature | 2017 Mar

REPOSITORIES: biostudies-literature

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SNP-SNP interactions between WNT4 and WNT5A were associated with obesity related traits in Han Chinese Population.

Dong Shan-Shan SS   Hu Wei-Xin WX   Yang Tie-Lin TL   Chen Xiao-Feng XF   Yan Han H   Chen Xiang-Ding XD   Tan Li-Jun LJ   Tian Qing Q   Deng Hong-Wen HW   Guo Yan Y  

Scientific reports 20170308


Considering the biological roles of WNT4 and WNT5A involved in adipogenesis, we aimed to investigate whether SNPs in WNT4 and WNT5A contribute to obesity related traits in Han Chinese population. Targeted genomic sequence for WNT4 and WNT5A was determined in 100 Han Chinese subjects and tag SNPs were selected. Both single SNP and SNP × SNP interaction association analyses with body mass index (BMI) were evaluated in the 100 subjects and another independent sample of 1,627 Han Chinese subjects. M  ...[more]

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