Unknown

Dataset Information

0

Transcriptome Analysis of Mango (Mangifera indica L.) Fruit Epidermal Peel to Identify Putative Cuticle-Associated Genes.


ABSTRACT: Mango fruit (Mangifera indica L.) are highly perishable and have a limited shelf life, due to postharvest desiccation and senescence, which limits their global distribution. Recent studies of tomato fruit suggest that these traits are influenced by the expression of genes that are associated with cuticle metabolism. However, studies of these phenomena in mango fruit are limited by the lack of genome-scale data. In order to gain insight into the mango cuticle biogenesis and identify putative cuticle-associated genes, we analyzed the transcriptomes of peels from ripe and overripe mango fruit using RNA-Seq. Approximately 400 million reads were generated and de novo assembled into 107,744 unigenes, with a mean length of 1,717?bp and with this information an online Mango RNA-Seq Database (http://bioinfo.bti.cornell.edu/cgi-bin/mango/index.cgi) which is a valuable genomic resource for molecular research into the biology of mango fruit was created. RNA-Seq analysis suggested that the pathway leading to biosynthesis of the cuticle component, cutin, is up-regulated during overripening. This data was supported by analysis of the expression of several putative cuticle-associated genes and by gravimetric and microscopic studies of cuticle deposition, revealing a complex continuous pattern of cuticle deposition during fruit development and involving substantial accumulation during ripening/overripening.

SUBMITTER: Tafolla-Arellano JC 

PROVIDER: S-EPMC5397871 | biostudies-literature | 2017 Apr

REPOSITORIES: biostudies-literature

altmetric image

Publications

Transcriptome Analysis of Mango (Mangifera indica L.) Fruit Epidermal Peel to Identify Putative Cuticle-Associated Genes.

Tafolla-Arellano Julio C JC   Zheng Yi Y   Sun Honghe H   Jiao Chen C   Ruiz-May Eliel E   Hernández-Oñate Miguel A MA   González-León Alberto A   Báez-Sañudo Reginaldo R   Fei Zhangjun Z   Domozych David D   Rose Jocelyn K C JKC   Tiznado-Hernández Martín E ME  

Scientific reports 20170420


Mango fruit (Mangifera indica L.) are highly perishable and have a limited shelf life, due to postharvest desiccation and senescence, which limits their global distribution. Recent studies of tomato fruit suggest that these traits are influenced by the expression of genes that are associated with cuticle metabolism. However, studies of these phenomena in mango fruit are limited by the lack of genome-scale data. In order to gain insight into the mango cuticle biogenesis and identify putative cuti  ...[more]

Similar Datasets

2020-12-01 | GSE142427 | GEO
| S-EPMC8464866 | biostudies-literature
| S-EPMC6807195 | biostudies-literature
| S-EPMC4332321 | biostudies-literature
2015-02-20 | PXD000808 | Pride
| S-EPMC3055156 | biostudies-literature
| S-EPMC5072284 | biostudies-literature
| S-EPMC5096593 | biostudies-literature
| S-EPMC8245510 | biostudies-literature
| S-EPMC4647706 | biostudies-literature