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An RNA Virome Associated to the Golden Orb-Weaver Spider Nephila clavipes.

ABSTRACT: The golden orb-weaver spider Nephila clavipes, known for its sexual size dimorphism, is abundant and widespread in the New World. The first annotated genome of orb-weaver spiders, exploring N. clavipes, has recently been reported. The study, focused primarily on the diversity of silk specific genes, shed light into the complex evolutionary history of spiders. Furthermore, a robust transcriptome analysis provided a massive resource for N. clavipes RNA survey. Here, I present evidence of viral sequences corresponding to the first 10 extant virus species associated to N. clavipes and indeed, nephilids. The putatively new species are linked to ssRNA positive-strand viruses, such as Picornavirales, and to ssRNA negative-strand and dsRNA viruses. In addition, I detected sequence data of new strains of two recently reported arthropod viruses, which complemented and extended the corresponding sequence references. The identified viruses appear to be complete, potentially functional, and presenting the typical architecture and consistent viral domains. The intrinsic nature of the detected sequences and their absence in the recently generated genome assembly, suggest that they correspond to bona fide RNA virus sequences. The available RNA data allowed for the first time to address a tissue/organ specific analysis of virus loads/presence in spiders, suggesting a complex spatial and differential distribution of the tentative viruses, encompassing the spider brain and also silk and venom glands. Until recently, the virus landscape associated to spiders remained elusive. The discovered viruses described here provide only a fragmented glimpse of the potential magnitude of the Aranea virosphere. Future studies should focus not only on complementing and expanding these findings, but also on addressing the potential ecological role of these viruses, which might influence the biology of these outstanding arthropod species.

SUBMITTER: Debat HJ

PROVIDER: S-EPMC5660997 | biostudies-literature | 2017

REPOSITORIES: biostudies-literature

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An RNA Virome Associated to the Golden Orb-Weaver Spider Nephila clavipes.

Debat Humberto J HJ

Frontiers in microbiology 20171025

The golden orb-weaver spider Nephila clavipes, known for its sexual size dimorphism, is abundant and widespread in the New World. The first annotated genome of orb-weaver spiders, exploring N. clavipes, has recently been reported. The study, focused primarily on the diversity of silk specific genes, shed light into the complex evolutionary history of spiders. Furthermore, a robust transcriptome analysis provided a massive resource for N. clavipes RNA survey. Here, I present ...[more]

PMID: 29118750

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Project description:BACKGROUND: The origin and diversification patterns of lineages across the Indian Ocean islands are varied due to the interplay of the complex geographic and geologic island histories, the varying dispersal abilities of biotas, and the proximity to major continental landmasses. Our aim was to reconstruct phylogeographic history of the giant orbweaving spider (Nephila) on western Indian Ocean islands (Madagascar, Mayotte, Réunion, Mauritius, Rodrigues), to test its origin and route of dispersal, and to examine the consequences of good dispersal abilities for colonization and diversification, in comparison with related spiders (Nephilengys) inhabiting the same islands, and with other organisms known for over water dispersal. We used mitochondrial (COI) and nuclear (ITS2) markers to examine phylogenetic and population genetic patterns in Nephila populations and species. We employed Bayesian and parsimony methods to reconstruct phylogenies and haplotype networks, respectively, and calculated genetic distances, fixation indices, and estimated clade ages under a relaxed clock model. RESULTS: Our results suggest an African origin of Madagascar Nephila inaurata populations via Cenozoic dispersal, and the colonization of the Mascarene islands from Madagascar. We find evidence of gene flow across Madagascar and Comoros. The Mascarene islands share a common 'ancestral' COI haplotype closely related to those found on Madagascar, but itself absent, or as yet unsampled, from Madagascar. Each island has one or more unique haplotypes related to the ancestral Mascarene haplotype. The Indian Ocean N. inaurata are genetically distinct from the African populations. CONCLUSIONS: Nephila spiders colonized Madagascar from Africa about 2.5 (0.6-5.3) Ma. Our results are consistent with subsequent, recent and rapid, colonization of all three Mascarene islands. On each island, however, we detected unique haplotypes, consistent with a limited gene flow among the islands subsequent to colonization, a scenario that might be referred to as speciation in progress. However, due to relatively small sample sizes, we cannot rule out that we simply failed to collect Mascarene haplotypes on Madagascar, a scenario that might imply human mediated dispersal. Nonetheless, the former interpretation better fits the available data and results in a pattern similar to the related Nephilengys. Nephilengys, however, shows higher genetic divergences with diversification on more remote islands. That the better disperser of the two lineages, Nephila, has colonized more islands but failed to diversify, demonstrates how dispersal ability can shape both the patterns of colonization and formation of species across archipelagos.

Project description:Males are expected to mate with as many females as possible, but can maximize their reproductive success through strategic mating decisions. For instance, males can increase their own fitness by mating with high quality females that produce more offspring. Additionally, males can adjust mating effort based on the relative distribution of females and male competitors. To test factors that influence male mate choice, we assessed male mating decisions in the golden silk orb-weaver spider, Trichonephila clavipes (Nephilidae), a species in which females are polyandrous, males guard females before and after copulation occurs and large males are the most successful at guarding mates. We tested the hypothesis that males spend more time guarding high quality females that are spatially isolated, and when the risk of sperm competition is higher. We also hypothesized that this effect increases with male body size. We assessed solitary and aggregated female webs in the field and quantified female quality (i.e., female body condition), male size (i.e., male body size), the risk of sperm competition (i.e., number of males in each female web), and mate-guarding duration (i.e., number of days each male spent in each web). We found that mate-guarding behaviour is largely influenced by the presence of male competitors. In addition, male body size seems to moderately influence male guarding decisions, with larger males guarding for a longer time. Finally, female body condition and type of web (i.e., solitary or aggregated) seem to play small roles in mate-guarding behaviour. As mate-guarding duration increased by 0.718 day per each additional male competitor in the web, and guarding behaviour prevents males from seeking additional mates, it seems that guarding females can be considerably costly. We conclude that failing to guard a sexual partner promotes high costs derived from sperm competition, and a male cannot recover his relative loss in fertilization success by seeking and fertilizing more females. In addition, the search for more sexual partners can be constrained by possible high costs imposed by weight loss and fights against other males, which may explain why the type of web only moderately influenced male mate choice. Following the same rationale, if high-quality females are not easy to find and/or mating with a high-quality female demands much effort, males may search females and guard them regardless of female quality. In conclusion, the factor that most influences male mate-guarding behaviour among T. clavipes in the field is the risk of sperm competition.

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An RNA Virome Associated to the Golden Orb-Weaver Spider Nephila clavipes.

Publications

An RNA Virome Associated to the Golden Orb-Weaver Spider <i>Nephila clavipes</i>.

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