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Mechanistic insights into the role of prenyl-binding protein PrBP/? in membrane dissociation of phosphodiesterase 6.

ABSTRACT: Isoprenylated proteins are associated with membranes and their inter-compartmental distribution is regulated by solubilization factors, which incorporate lipid moieties in hydrophobic cavities and thereby facilitate free diffusion during trafficking. Here we report the crystal structure of a solubilization factor, the prenyl-binding protein (PrBP/?), at 1.81?Å resolution in its ligand-free apo-form. Apo-PrBP/? harbors a preshaped, deep hydrophobic cavity, capacitating apo-PrBP/? to readily bind its prenylated cargo. To investigate the molecular mechanism of cargo solubilization we analyzed the PrBP/?-induced membrane dissociation of rod photoreceptor phosphodiesterase (PDE6). The results suggest that PrBP/? exclusively interacts with the soluble fraction of PDE6. Depletion of soluble species in turn leads to dissociation of membrane-bound PDE6, as both are in equilibrium. This "solubilization by depletion" mechanism of PrBP/? differs from the extraction of prenylated proteins by the similar folded solubilization factor RhoGDI, which interacts with membrane bound cargo via an N-terminal structural element lacking in PrBP/?.

SUBMITTER: Qureshi BM

PROVIDER: S-EPMC5758567 | biostudies-literature | 2018 Jan

REPOSITORIES: biostudies-literature

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Mechanistic insights into the role of prenyl-binding protein PrBP/δ in membrane dissociation of phosphodiesterase 6.

Qureshi Bilal M BM Schmidt Andrea A Behrmann Elmar E Bürger Jörg J Mielke Thorsten T Spahn Christian M T CMT Heck Martin M Scheerer Patrick P

Nature communications 20180108 1

Isoprenylated proteins are associated with membranes and their inter-compartmental distribution is regulated by solubilization factors, which incorporate lipid moieties in hydrophobic cavities and thereby facilitate free diffusion during trafficking. Here we report the crystal structure of a solubilization factor, the prenyl-binding protein (PrBP/δ), at 1.81 Å resolution in its ligand-free apo-form. Apo-PrBP/δ harbors a preshaped, deep hydrophobic cavity, capacitating apo-PrBP/δ to readily bind ...[more]

PMID: 29311697

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Dataset Information

Mechanistic insights into the role of prenyl-binding protein PrBP/? in membrane dissociation of phosphodiesterase 6.

Publications

Mechanistic insights into the role of prenyl-binding protein PrBP/δ in membrane dissociation of phosphodiesterase 6.

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