Dataset Information

Extracellular vesicles in DLBCL provide abundant clues to aberrant transcriptional programming and genomic alterations.

ABSTRACT: The biological role of extracellular vesicles (EVs) in diffuse large B-cell lymphoma (DLBCL) initiation and progression remains largely unknown. We characterized EVs secreted by 5 DLBCL cell lines, a primary DLBCL tumor, and a normal control B-cell sample, optimized their purification, and analyzed their content. We found that DLBCLs secreted large quantities of CD63, Alix, TSG101, and CD81 EVs, which can be extracted using an ultracentrifugation-based method and traced by their cell of origin surface markers. We also showed that tumor-derived EVs can be exchanged between lymphoma cells, normal tonsillar cells, and HK stromal cells. We then examined the content of EVs, focusing on isolation of high-quality total RNA. We sequenced the total RNA and analyzed the nature of RNA species, including coding and noncoding RNAs. We compared whole-cell and EV-derived RNA composition in benign and malignant B cells and discovered that transcripts from EVs were involved in many critical cellular functions. Finally, we performed mutational analysis and found that mutations detected in EVs exquisitely represented mutations in the cell of origin. These results enhance our understanding and enable future studies of the role that EVs may play in the pathogenesis of DLBCL, particularly with regards to the exchange of genomic information. Current findings open a new strategy for liquid biopsy approaches in disease monitoring.

SUBMITTER: Rutherford SC

PROVIDER: S-EPMC6265635 | biostudies-literature | 2018 Aug

REPOSITORIES: biostudies-literature

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Extracellular vesicles in DLBCL provide abundant clues to aberrant transcriptional programming and genomic alterations.

Rutherford Sarah C SC Fachel Angela A AA Li Sheng S Sawh Seema S Muley Ashlesha A Ishii Jennifer J Saxena Ashish A Dominguez Pilar M PM Caldas Lopes Eloisi E Agirre Xabier X Chambwe Nyasha N Correa Fabian F Jiang Yanwen Y Richards Kristy L KL Betel Doron D Shaknovich Rita R

Blood 20180702 7

The biological role of extracellular vesicles (EVs) in diffuse large B-cell lymphoma (DLBCL) initiation and progression remains largely unknown. We characterized EVs secreted by 5 DLBCL cell lines, a primary DLBCL tumor, and a normal control B-cell sample, optimized their purification, and analyzed their content. We found that DLBCLs secreted large quantities of CD63, Alix, TSG101, and CD81 EVs, which can be extracted using an ultracentrifugation-based method and traced by their cell of origin s ...[more]

PMID: 29967128

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Dataset Information

Extracellular vesicles in DLBCL provide abundant clues to aberrant transcriptional programming and genomic alterations.

Publications

Extracellular vesicles in DLBCL provide abundant clues to aberrant transcriptional programming and genomic alterations.

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