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Covariate association eliminating weights: a unified weighting framework for causal effect estimation.

ABSTRACT: Weighting methods offer an approach to estimating causal treatment effects in observational studies. However, if weights are estimated by maximum likelihood, misspecification of the treatment assignment model can lead to weighted estimators with substantial bias and variance. In this paper, we propose a unified framework for constructing weights such that a set of measured pretreatment covariates is unassociated with treatment assignment after weighting. We derive conditions for weight estimation by eliminating the associations between these covariates and treatment assignment characterized in a chosen treatment assignment model after weighting. The moment conditions in covariate balancing weight methods for binary, categorical and continuous treatments in cross-sectional settings are special cases of the conditions in our framework, which extends to longitudinal settings. Simulation shows that our method gives treatment effect estimates with smaller biases and variances than the maximum likelihood approach under treatment assignment model misspecification. We illustrate our method with an application to systemic lupus erythematosus data.

SUBMITTER: Yiu S

PROVIDER: S-EPMC6481550 | biostudies-literature | 2018 Sep

REPOSITORIES: biostudies-literature

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Covariate association eliminating weights: a unified weighting framework for causal effect estimation.

Yiu Sean S Su Li L

Biometrika 20180901 3

Weighting methods offer an approach to estimating causal treatment effects in observational studies. However, if weights are estimated by maximum likelihood, misspecification of the treatment assignment model can lead to weighted estimators with substantial bias and variance. In this paper, we propose a unified framework for constructing weights such that a set of measured pretreatment covariates is unassociated with treatment assignment after weighting. We derive conditions for weight estimatio ...[more]

PMID: 31031408

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Project description:Linear mixed models (LMMs) are among the most commonly used tools for genetic association studies. However, the standard method for estimating variance components in LMMs-the restricted maximum likelihood estimation method (REML)-suffers from several important drawbacks: REML requires individual-level genotypes and phenotypes from all samples in the study, is computationally slow, and produces downward-biased estimates in case control studies. To remedy these drawbacks, we present an alternative framework for variance component estimation, which we refer to as MQS. MQS is based on the method of moments (MoM) and the minimal norm quadratic unbiased estimation (MINQUE) criterion, and brings two seemingly unrelated methods-the renowned Haseman-Elston (HE) regression and the recent LD score regression (LDSC)-into the same unified statistical framework. With this new framework, we provide an alternative but mathematically equivalent form of HE that allows for the use of summary statistics. We provide an exact estimation form of LDSC to yield unbiased and statistically more efficient estimates. A key feature of our method is its ability to pair marginal z-scores computed using all samples with SNP correlation information computed using a small random subset of individuals (or individuals from a proper reference panel), while capable of producing estimates that can be almost as accurate as if both quantities are computed using the full data. As a result, our method produces unbiased and statistically efficient estimates, and makes use of summary statistics, while it is computationally efficient for large data sets. Using simulations and applications to 37 phenotypes from 8 real data sets, we illustrate the benefits of our method for estimating and partitioning SNP heritability in population studies as well as for heritability estimation in family studies. Our method is implemented in the GEMMA software package, freely available at www.xzlab.org/software.html.

Dataset Information

Covariate association eliminating weights: a unified weighting framework for causal effect estimation.

Publications

Covariate association eliminating weights: a unified weighting framework for causal effect estimation.

Similar Datasets

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